Gene detail

Gene detail information of Glyur000027s00001562

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G13330.1	proteasome activating protein 200
NR	XP_006586180.1	PREDICTED: proteasome activator subunit 4-like [Glycine max]
Swissprot	tr\|F4JC97\|PSME4_ARATH	Proteasome activator subunit 4
trEMBL	tr\|I1N058\|I1N058_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G07950.1}

Sequence

Transcript Sequence

>Glyur000027s00001562.1
GAATCTGATGGCGGCCCCAAAGTGAAGTGAAAGTCAATTGTAATTTGCACCCCAAGTCTCCTTTTTCCTCCTATATTTAATTAATAACAATAATTTTCACACACACTCTCTCTCTTCCTTCTCTGAGTCTATTTCCCTTTCTTGTTCAGAAAGTTCCTCTAAATCTCCAATTCAATCCTCACCTACACACCTATATATTTATACACACATAGAGAGTTACAGAGCGAGATATAACTACCAAAGCCTCTGCTTATTGCTCTTCAGTTTTTTCTCGCATTTCCTCAGACAAAAAAATTATGCATCTCTATAATGCATGGTTGCCGCCACCGGTGGCGGCTCAGACCGCCGCGGAGAGAGACTCGTTCGCGCGCATCATCGCCGACGTCAAGTCATCCTTCCGCCACGACGATCCCGATTCCGTCTTCTCCACTATCAAATACATCTCCGTCCTTGACCTTTTCATAAAGGCGAAAAGTGATGTGTCTTTGGAAGATGTCCACACCCTTATTCAGATGGGCCTTGAACTATTTCACATGTCCCGTAATAAGCTTTATGCCCAGGTTAGATGGGGAAATTTATTAGTCAGACTGCTCAACAGGTTTAGGAAAAAGATTGCACTGACTATTGAATGGAGGCCTCTGTATGATACGCTGATTAGCACACATTTTACTAGAAGTACAGGTCCAGAAGGTTGGAGAATAAGACAACGGCATTTTGAAACTATAACTTCTCTTGTTCAGTCCTGCCGGAGTTTCTTCCCATCAGGTTCTGCCTTTGAGATATGGTCTGAGTTTAAATCTTTATTGCAAAACCCATGGCATAATTCAACCTTTGAAGGATCTGGGTTTGCCAGACTGTTTCTCCCAACAAATCTGGACAATCAGGCCTTTTTTACACATGATTGGATAACAGAGTGTATCGACTTGTGGGAATCTATACCAAATTGCCAATTCTGGAACAGTCAATGGGCAGATGTTATAGCTCGTGTTGTAAAAAATTACCACAATATTCACTGGGAGGGCCTCTTGCCTTTGCTTTTTGCTAAATACTTAAATATGTTTGAGGTTCCTGTTGCAAATGGAAGTGGATCATATCCCTTTTCACTGGATGTCCCAAGAAACACAAGGTTCTTGTTCTCCAGTAGAACTTCCACCCCGGCAAAGGCTATCGCCAAATCAATGGTATATTTACTAAAACCTGGTAGTTCAGCACAACAGCACTTTGAGAAATTGATCAACATTTTGGAACAATATTATCATCCCTCAAATGGTGGTCGATGGACCTACTCATTGGAGCGGTTTTTGCTTCATTTGGTGATTCAATTTCAGAAGCGTCTACAGAATGANCAATTGGGCAAAAAGAATAGCAGACCCACTGAACAGCATCTTGGGGAATCAGAGAGGGTTTTCTTTGTTAATACAGTGCTAAAATTAATTGATCGGGGTCAATACAGCAAGAATGATAATCTCTCTGAGACAGTTGCTGCAGCAACTTCTATATTGTCCTATGTGGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGATTTCGTATGGCCCTTGAGACGATGACTGCCACCCACCAGTTGAAAATTGCGGTTATGTCAGTGGCATTTGTTGGGCGTTCACTATTTTATACATCTGTATCAGCTTCCTCCATGAAACCAATGGATCTTGGTGGTGGTGATGAAACATTTTTTGATCTTGTGGGGGTTTCACTGTCCAATGCATTACTTGGCATGGATGCTAACGACCCTCCAAAAACCTTAGCTACCATGCAGTTAATAGGTTCCATATTTTCAAATTTGGCTTTATTAGATGATAAAATTGATGATTTATCATTTATGCCAATGATCCGCTTTTCTGAATGGCTGGATGAGTTCTTATGCCGTCTGTTTTCATTGCTTCTACACTTAGAACCCAGCAGTGTTATAAATGAAGGTCTGCACTCATCAGCGGCGTCAGGAACTTTTCTAGTTGATGATGGTCCATACTACTTTTGTGTTCTTGAAATTCTGCTGGGGAGGCTTTCAAAATCACTGTATAATCAGGCCTTGAAGAAAATTTCCAAGTTTGTGAGGACAAATATTCTTCCTGGTGCTGTTGCAGAGGTTGGACTGCTATGTTGTGCATGTGTTCACTCGAACCCAGAAGAAGCAGTCAGTCATCTTGTTGAGCCAATATTAGTGTCTGTGATATCNTCTTTGAAAGGAACACCACGCACTGGATTTGGAGGAGGAGGAACTTTCGACACTTCTGCTTCAACCAAGGTTAGGTCTACAATTTCACCTGCTCTTGAGGCTGCAATTGACTATCAACTAAAGATACTATCAGTTGGCATCACATATGGAGGTCCAACACTCCTCCGCTACAAGGATCAACTAAAAGAAGTTATCTTCTTGGCTTTTGACTCACCATCCTGGAAGGTTAATGGTGCTGCTGATCATCTTCTTCGATCGCTTCTTGGAAGTCAGATTCATTATTATCCAATAGACCAGTATAAGTGTGTTCTTAGTCACCCTGATGCTGTTGCTTTAGAAGAATGGATTAGCACAAAAGANTTTTCCACTGATGAAAGGTTGATCCCGAAGTGGCATATTCCTAGTGATGAAGAGATTAATTTTGCAAACGAGCTTTTAGATATTCACTTCAAGTCTGCTTTGGATGATCTGTTGAAAATATGCCAAACTAAAATTCATGCTGATCAAGGAGATGAAAAAGAGCACTTGAAAGTGACTCTTTTACGTATTGAATCATCATTGCAAGGTCTTTTTTCTTGCTTGCCTGATTTTGTCCCAGACTCTAGGAATGGAATGGTTGAAGATCAAAAACAAACGTTTCTAATTGCTGGGGCAACAGGCTGTACTGTCGGTAGTACTGCTCTGCGTGAAAAAGCTGCTGAGATTGTACATGCAGCCTGCAAATATGTCCTTGAGAAAAAGTCTGATGACAGCATTCTGTTGATACTCATTATTCGTATTATTGATGCTTTAGGAAACTATGGAAGCTTGGAATATGATGAGTGGGCTAGTCACAGGCAGGCTTGGAAGTTAGAATCTGCTGCCATAGTAGAGCCGCCAATTAATTTTATTGTGTCATCTCATTCTAAAGGAAAGAAAAGACCCAGGTGGGCTCTTATCGACAAGGCATTCATGCACAATACCTGGAGGTCTTCACAAGCATCCTATCATCTTTACCGTACAAGTGGGAATTACTGTCCATCCGAGCATGTGACTAATTTCATGGATGATTTGTTGAGTCTCTCTTTACATAGCTATGAAACTGTCCGCCTGCTTGCAGGGAAAGCTCTAGTGAAGCTGATCAAGAGATGGCCATCTACGATTTCAAAATGTGTTATCACTCTTACTAGTAACTTGCAGGACCCCAATGCCAAGGAATATGCAGTCTTGGGTTCTTGTTCAGTCCTTGCCTCACAAACAGTTCTCAAGCATTTGACAACGGATCCAAAGTCATTCTCTTCATTTATCTTGTCAATTCTTTCAAGTTCCCATCATGAATCCTTGAAAGCTCAGAAAGCAATTAATGAGCTTTTTGTAAAGTACAACATTCAATTTTCTGGAGTATCTAGAAGCTTTTTCAGAATATCAGACATAGACAATCATACTGGTGGACTGAGTTTTTCAGATTTGGTTTCTCAGATTGGCTCTCTGAGTTTTGATTCTACTGGCTTGCATTGGCGGTATAATTTGATGGCTAACAGAGTTCTGCTTCTGCTGGCTTTGGCATCTCGGAACCACCCAAATTCATCATCTAAAATCCTGAGTGAAACCGCTGGACACTTTTTGAAGAATTTGAAAAGTCAACTTCCTCAGACAAGGATACTTGCAATTTCGGCTCTGAATACATTGTTAAAGGAATCACCTTATAAGCTGTCTCCTGGTGAGAAATCTGCCGTACTCAAGGATTTGCAAGGCAATATCAAGTCATCCCTTGAAGGAACTTTAACTCAAACTTTTCAGGAAGAGGGTTTCTTTAATGAGACACTCACTAGTCTTTCTCATGTTCATATAATAACTGATACTGAAACTGCTTCAAGAGGAAATCAAGGAGATTCCAGTTTCCAAAGCTTAGCAGATAAATCCATAACTCGTTTTTATTTTGAATTTTCTGCTTCATGGCCACGTACACCAAGTTGGATCTCCTTTTTAGGAAGTGATACATTCTACTCGAGTTTTGCTCGTATTTTCAAGCGTCTAGTACAAGAATGTGGCATGCCTGTAGTATTGGCTCTTAAAGGTGCAGTAGATGAGTTTACAATTGCCAAGGAGAGGTCTAAACAGTGTGTAGCTGCTGAAGCATTGGCAGGTGTGTTACATTCTGATATTGATGGTCTATCAGGAGCATGGGAAAGCTGGCTGATGCCACAGTTGAAGAATATCGTTTTATCACAGTCTGTTGAATCAGTTCCTGAGTGGGCCTCTTGCATAAGATATGCAGTTACTGGTAAAGGGAAGTATGGAACAAGAGTTCCTCTTTTGAGGCAGAAAATCCTGGATTCTTTGATGACACCTTTACCCCCAACAGTAGCTACCACCATAACAGCCAAGCGATATGCTTTTCTTGCTGCTGCTCTTATAGAAATATCCCCACAGAAAATGCCAGTAGCTGAAATTCAGCTCCACAGTACACTTCTGAAGGAAGTTCTTGGTAATATGTGCCACTCATCAGCCCAAGTGAGGGAGGCTCTAGGGGTTACCCTTTCTGTATTGTGCTCTAACATTCGNCTATATCATTCGAGTCATCATGATAATGCATGTGATGAGAGAAACAACAATGTTGATTATTTGATGAAAGATGAAAGCTGGGTTCAGTTTCTCACAGAGAGATCAGCTGAAGCAGTTGCGAACATTCAGATTGCTTCCCAATCAGATAAAGCGGTGAATCCCATAGATACAAGTTCTCAAAATGGGCATCTAGATGGTGATTCACAAGATGATATGAAATGGATGGAAACGCTACTGTACTTCATCATCTCGTCATTGAAGTCTGGGAGATCCTCTTATCTACTCGACGTGATTGTGGGGCTTCTTTATCCTGTGATTTCCTTGCAGGAAACATCAAATAAGGATTTGTCAACATTAGCCAAGGCAGCATTTCAATTGCTAAAATGGATGATTGTTCGGGAACCTCACCTCCATAAGGCCATAGCTGTGATTCTTTCTGCTGCCAATGATTCAAACTGGCGAACTAGATCTGCTACATTGACTTATCTGCGTACTTTCATGTACAGGCACACTTTCATTCTGTCAAGTTCAAAGAAACAAGAAATTTGGAGAACGGTTGAGAAGTTACTAGTAGACAACCAAGTAAGAGAACATGCTGCAGCAGTTTTAGCAGGCCTAATGAAGGGTGGAGATGAAGATCTAGCTAAAGATTTCCGTGATAGAGCTTATGTGGAGGGAAATATTGTACTGAAGAGAAGAAAATCGAGAAATGCAAGTTCTGGTTCATCTGTAGCATCTGTTCATGGTGCTGTACTAGCTTTGGTGGCTTCTGTATTATCAGCCCCATATGACATGCCCAGTTGGTTGCCGGACCATGTCACACTACTAGCTCGCTTTAGTGGGGAGCCATCCCCTGTGAAATCTACCGTTACAAAAGCTGTTGCAGAATTCCGGCGGACCCATGCTGATACATGGAATGTTCAAAAAGAATTATTTACTGAAGAGCAACTAGAGATTCTGGCAGATACATCCTCGTCATCATCGTATTTTGCTTGATCTAATAATCTGGAGATATTGTTGGGAGAGTACTGGAATATTGGTTAGGAAAAGTATGCTTTTAATTTTTTTCTGTATTTATAATTTGTAAAAATAGCTCTTATTTGCATTTTGTACCATTGATAATCTTTGTAAGAAGTTTATTCCTTAATCCAGTCTCACAAGTTGAGCTTCTAACCTTCCTCTATTCTGTAATCTTTCTTAGACCATGGGGTTAATTAAATCATCTGCTGGTAAATCCCACATGACACAGTCTGAGTTGAATATATTGGATAGATTTCTTATTTCTTTTGTAGCCTCCGAGTCATCCCCATTTTCCGCTTCAAGTTTTTCATGGAACTGGCTTTGCTGATCCATGGNTGTGCATGTGCTTCCAGTACACACACTTTGGTTCCATG

Protein Sequence

>Glyur000027s00001562.1
MHLYNAWLPPPVAAQTAAERDSFARIIADVKSSFRHDDPDSVFSTIKYISVLDLFIKAKSDVSLEDVHTLIQMGLELFHMSRNKLYAQVRWGNLLVRLLNRFRKKIALTIEWRPLYDTLISTHFTRSTGPEGWRIRQRHFETITSLVQSCRSFFPSGSAFEIWSEFKSLLQNPWHNSTFEGSGFARLFLPTNLDNQAFFTHDWITECIDLWESIPNCQFWNSQWADVIARVVKNYHNIHWEGLLPLLFAKYLNMFEVPVANGSGSYPFSLDVPRNTRFLFSSRTSTPAKAIAKSMVYLLKPGSSAQQHFEKLINILEQYYHPSNGGRWTYSLERFLLHLVIQFQKRLQNXQLGKKNSRPTEQHLGESERVFFVNTVLKLIDRGQYSKNDNLSETVAAATSILSYVEPSLVLPFVASRFRMALETMTATHQLKIAVMSVAFVGRSLFYTSVSASSMKPMDLGGGDETFFDLVGVSLSNALLGMDANDPPKTLATMQLIGSIFSNLALLDDKIDDLSFMPMIRFSEWLDEFLCRLFSLLLHLEPSSVINEGLHSSAASGTFLVDDGPYYFCVLEILLGRLSKSLYNQALKKISKFVRTNILPGAVAEVGLLCCACVHSNPEEAVSHLVEPILVSVISSLKGTPRTGFGGGGTFDTSASTKVRSTISPALEAAIDYQLKILSVGITYGGPTLLRYKDQLKEVIFLAFDSPSWKVNGAADHLLRSLLGSQIHYYPIDQYKCVLSHPDAVALEEWISTKXFSTDERLIPKWHIPSDEEINFANELLDIHFKSALDDLLKICQTKIHADQGDEKEHLKVTLLRIESSLQGLFSCLPDFVPDSRNGMVEDQKQTFLIAGATGCTVGSTALREKAAEIVHAACKYVLEKKSDDSILLILIIRIIDALGNYGSLEYDEWASHRQAWKLESAAIVEPPINFIVSSHSKGKKRPRWALIDKAFMHNTWRSSQASYHLYRTSGNYCPSEHVTNFMDDLLSLSLHSYETVRLLAGKALVKLIKRWPSTISKCVITLTSNLQDPNAKEYAVLGSCSVLASQTVLKHLTTDPKSFSSFILSILSSSHHESLKAQKAINELFVKYNIQFSGVSRSFFRISDIDNHTGGLSFSDLVSQIGSLSFDSTGLHWRYNLMANRVLLLLALASRNHPNSSSKILSETAGHFLKNLKSQLPQTRILAISALNTLLKESPYKLSPGEKSAVLKDLQGNIKSSLEGTLTQTFQEEGFFNETLTSLSHVHIITDTETASRGNQGDSSFQSLADKSITRFYFEFSASWPRTPSWISFLGSDTFYSSFARIFKRLVQECGMPVVLALKGAVDEFTIAKERSKQCVAAEALAGVLHSDIDGLSGAWESWLMPQLKNIVLSQSVESVPEWASCIRYAVTGKGKYGTRVPLLRQKILDSLMTPLPPTVATTITAKRYAFLAAALIEISPQKMPVAEIQLHSTLLKEVLGNMCHSSAQVREALGVTLSVLCSNIRLYHSSHHDNACDERNNNVDYLMKDESWVQFLTERSAEAVANIQIASQSDKAVNPIDTSSQNGHLDGDSQDDMKWMETLLYFIISSLKSGRSSYLLDVIVGLLYPVISLQETSNKDLSTLAKAAFQLLKWMIVREPHLHKAIAVILSAANDSNWRTRSATLTYLRTFMYRHTFILSSSKKQEIWRTVEKLLVDNQVREHAAAVLAGLMKGGDEDLAKDFRDRAYVEGNIVLKRRKSRNASSGSSVASVHGAVLALVASVLSAPYDMPSWLPDHVTLLARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEEQLEILADTSSSSSYFA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	352860	370142	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001562.1	PF11919.3	DUF3437	1726	1814	2.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.649
SRR1783600	control	18.743
SRR1783602	moderate drought stress	17.236
SRR1811619	moderate drought stress	17.442

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.961
DRR006520	Root Summer glycyrrhizin high producing strain	16.845
DRR006521	Root Winter glycyrrhizin high producing strain	19.393
DRR006522	Root Winter glycyrrhizin high producing strain	18.859
DRR006523	Root Summer glycyrrhizin low producing strain	17.812
DRR006524	Root Summer glycyrrhizin low producing strain	17.798
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.985
SRR2868004	Drought Stress (root)	65.625
SRR2967015	Control (root)	51.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.374
SRR9715740	Leaf	25.525
SRR9715741	Leaf	32.682
SRR9715739	Root	4.377
SRR9715742	Root	48.409
SRR9715743	Root	39.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.413
SRR8749028	MeJA induced 9h	162.967
SRR8749029	MeJA induced 9h	88.011
SRR8749030	Uninduced	74.379
SRR8749031	Uninduced	50.312
SRR8749032	Uninduced	50.399

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.844
SRR8400027	Control - Root	38.027