Gene detail

Gene detail information of Glyur000027s00001557

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23810.1	1.00E-150	amino acid permease 7
NR	KEH34118.1	0	transmembrane amino acid transporter family protein [Medicago truncatula]
Swissprot	tr\|Q9FF99\|AAP7_ARATH	0	Probable amino acid permease 7
trEMBL	tr\|A0A072UYC4\|A0A072UYC4_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:KEH34118.1}

Sequence

Transcript Sequence

>Glyur000027s00001557.1
TGGATGGTCCCATTTGGCATGTGGGAATTGGGATGATGAGTATAAATCTCCTTTGAGATTCTTCTACAGCTTATAAAGTGTACTAATTCATCTTATGGTTGGTGAATACTCTTTGACAGAACAACCCCTCTTAGCAAACCGTGATACCAATTCATCAGAATCACATAGGTTACTCATAGAGTTTTACTAAAATCTGCAAATGGAATAATACCTTATTTTCCTCTTTTGCTTCTTACTTTCTCTCCCCCTGAAATCAGACCTGAGCTTCTAGAAATTGGGACAATCCCTTCCCATTAGGATAAAGGGATAAAACCAAATGATATTCCATCCAATCACTCTAAAAAGGTGTAATCTCAACACAAGATGCGACCCAACTGAATAAAGGTGTTGCTTTTACGCCAGTGGTTGGTTCTACATATTTTGTAATGCGAAGCTGAACATAGATATTCCTTGAGGTGTGGAAGATGCTAGACGTGCGTGACCTTAAAAAGTATGACGAGGAGAGGTTGAAATGAACTTCCATTACAGCATAAGACAATTTTCGATGTATATGTAAATATNATCTCCAACAATTTGGGTGCTTTTCAATTCAAAGGTCAGAAGAACTATATGGTTTTGAACCACTTGGGTTTTTGGAAGACTACCTAACAAACCCACCCACTAACATCTTGTCCACAGATACTGAATCTTTTTTCACTATTTCGACCACAAAGTAAGTTTGAAGATGATAAAAAAGAGTTAACAAAAAAAATTCCGTGGTGAATTTGACAGCTGATTCCTCTATTATTTGGATAGTATCATTAGTTTGAACAAGCAATGTATCTGACCTTCACATAAGCCTTATAATAGCAATTACCTCAAATATTCACACCTCATGCTGCTTCAAAGAAGTTACGTCAGCCATAGCATCCAGCCCTATAAGGCTATAACTATTAGAGGCCATAGTTTCATGCAACTAAGAGCATTTGTCTTGGGTCAAGTACAGAGACATTTTCTTGAACTTCTGCTGTGTTAAGAAAATTGTAAAACTCGGTGAGAGCTTCCATTGGGGTTGTATGCTTGGATAAAGATGGATGTGAAAAACTCTCTCCAAATAGCTAGAAGTGTTAACGATGCTTATGATGATGATGGACATGCCAAAAGGACTGGAACTTTGAAGAGTGCAGTTGCTCATATCATCACTGCTGTTATTGGTTCTGGTGTTTTGTCTCTGGCATGGAGCACTGCACAATTGGGATGGATTGGAGGGCCAGTTGCCTTGCTTTGCTGTGCAATTGTTACCTATATTTCTTCATTCCTCCTATCTGATTGTTACAGAAATCCTGATCCTGTTACTGGGAAAAGAAACTACTCATACATGGATGCTGTTAGAGTCAATCTTGGTAAGAGAAGGACATATTTGGCTGGTACCCTTCAATTTTTGACCTTGTATGGGACTAGTACTGCCTATGTAATTACTACAGCAACCAGTCTGAGGGCTATTCTAAGATCAAATTGTTATCACAAGGAAGGGCATGAGGCTCCTTGTAGTTATGGGGGTAACTTGTATATGGTGCTGTTTGGACTTTCTCAGATTGTCATGTCATTCATACCGGATCTCCATAACATGGCATGGGTTTCAGTTGTTGCTGCACTCATGTCTTTTACATACTCTTTCATTGGACTAGGACTTGGTATAGCAACAGTCATAGCAAATGGTAGAATTATGGGGAGTGTGGCAGGAATACAAGCTGCTAATGCTGCTGACAAAATCTGGTCAGTCTTCCAGGCACTTGGTGATGTTGCATTTGCCTATCCATACTCAATTCTCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAGAATCAAACCATGAAAAAGGCCTCCATGATTGCAATCTTCATTACNACATTCTTCTACCTCTGTTGTGGATGCTTTGGATATGCTGCTTTTGGNAATGATACACCAGGAAACCTCTTGACTGGGTTTGGGTTTTATGAGCCTTACTGGCTTATTGACCTTGCTAATGTTTGCATCATTATTCATCTGGTGGGAGGATATCAGATATACAGTCAACCAATATATAGTACTGCTGATAGATGGTGTGCAAAAAGGTTCCCCAACAGTGGCTTTGTGAACGACTTCCACAAAGTGAAACTGCCTCTGTTGCCTGGTTTTCAGCTAAACCTTTTCAGGTTCTGTTTTAGAACAGCCTATGTGATTTCAACCACAGGACTTGCAATTCTGTTCCCTTACTTCAACCAAGTTCTGGGAGTGTTGGGAGCCATCAACTTCTGGCCANTGGCTATATATTTCCCAGTGGAGATGTACTTTGTGCAGAACAAGATTGGAGCTTGGACTAGGAAATGGATTGTTCTCAGGATATTCAGCTTTGCTTGCTTCCTTGTCACAATGATGGGATTCGTGGGGTCATTTGAAGGAATCATACGTGCAAAACTAAAATGAAAAGGCTTNAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	319216	323206	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001557.1	PF01490.13	Aa_trans	26	456	2.50E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.248
SRR1783600	control	0.235
SRR1783602	moderate drought stress	0.237
SRR1811619	moderate drought stress	0.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.132
DRR006520	Root Summer glycyrrhizin high producing strain	0.131
DRR006521	Root Winter glycyrrhizin high producing strain	0.453
DRR006522	Root Winter glycyrrhizin high producing strain	0.441
DRR006523	Root Summer glycyrrhizin low producing strain	0.089
DRR006524	Root Summer glycyrrhizin low producing strain	0.134
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.318
SRR2868004	Drought Stress (root)	4.091
SRR2967015	Control (root)	3.796

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.807
SRR9715740	Leaf	43.553
SRR9715741	Leaf	63.353
SRR9715739	Root	0.131
SRR9715742	Root	0.645
SRR9715743	Root	0.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.644
SRR8749028	MeJA induced 9h	1.364
SRR8749029	MeJA induced 9h	0.360
SRR8749030	Uninduced	0.064
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.593
SRR8400027	Control - Root	1.628