Gene detail information of Glyur000027s00001556


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55730.29.00E-168cation exchanger 5
NRXP_003530824.20PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Glycine max]
COGYP_007168148.11.00E-74CaCA family calcium/proton antiporter [Halothece sp. PCC 7418]
Swissprottr|Q8L783|CAX5_ARATH0Vacuolar cation/proton exchanger 5
trEMBLtr|K7LAF5|K7LAF5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44910.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00027308601313892+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006812  cation transport

GO:0006816  calcium ion transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0008324  cation transmembrane transporter activity

GO:0015369  calcium:proton antiporter activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000027s00001556.1PF01699.19Na_Ca_ex1152611.10E-23
Glyur000027s00001556.1PF01699.19Na_Ca_ex3054353.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.293
SRR1783600control8.371
SRR1783602moderate drought stress8.595
SRR1811619moderate drought stress8.384

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.812
DRR006520Root Summer glycyrrhizin high producing strain8.946
DRR006521Root Winter glycyrrhizin high producing strain11.643
DRR006522Root Winter glycyrrhizin high producing strain11.405
DRR006523Root Summer glycyrrhizin low producing strain13.003
DRR006524Root Summer glycyrrhizin low producing strain12.506
DRR006525Leaf Summer glycyrrhizin high producing strain2.244
DRR006526Leaf Summer glycyrrhizin high producing strain2.354

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)24.795
SRR2868004Drought Stress (root)30.414
SRR2967015Control (root)30.984

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf7.950
SRR9715740Leaf18.115
SRR9715741Leaf13.468
SRR9715739Root11.639
SRR9715742Root16.049
SRR9715743Root14.153

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.937
SRR8749028MeJA induced 9h4.265
SRR8749029MeJA induced 9h2.059
SRR8749030Uninduced3.080
SRR8749031Uninduced1.479
SRR8749032Uninduced2.095

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root26.018
SRR8400027Control - Root24.292

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved