Gene detail

Gene detail information of Glyur000027s00001551

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13235.3	8.00E-174	ubiquitin family protein
NR	KHN31704.1	0	DNA damage-inducible protein 1 [Glycine soja]
trEMBL	tr\|K7MQF1\|K7MQF1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G08070.2}

Sequence

Transcript Sequence

>Glyur000027s00001551.1
GTCTTTACATTTTACCTCGTACCACACTTGAGCTNCCATCGAAAAACTAACCTCNACCCCCTTTTTTGCTCTTGTGCTGCATTCAACAACAACAACATCGTCACAAATCTAGAGACAGGGAGAGAAACGGGTGCAAGATGAAGATCACTGTCATGACTTCTGATGAACAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAGGCATTGCTTGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAAATTCTGTTTAATGGAAAGGAGGTGAGGAATTCTGATAAGTTGAGTGCCCTTGGTGTCAAGGATGATGATTTGCTAATGATGGCCTCTGGTGCTGCTGATTCTAGTGGAACTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTAAACCCTGGTGCTTTTCAGCAGCACTTTAGACGTGATCCTAATTTGATGGGTCAGCTCTTTCAGAGTGACCCNGAGTTGGCGCAAGCTATTCTTGGGAATGATCTTAATAGATTGCAGGAAATTTTACGAATGCGTCACCGCCAAAGAGATGAACTANGGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATAAAGGAATTGATGAAAATTGGGAAGCTGCACTTGAACATAATCCTGAAGCTTTTGCCAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTACCACTGAAGGCATTTGTTGATAGTGGAGCCCAATCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAATCAGAAATATTGGGCCGAATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGGCTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTAAAAGAAAATGTTTTACGAGTTGGTGGAGGAGAAGTTTCCGTGCCATTTTTGCATGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAGTATGCTAAAGAAGCTTCAGGCTCAGGAGGCCCAGTTACATCAGGGAGCAATAATCCATCACAAGGTGGTGCGCCTTCTGGAGGAGCTTCTGGTGACAGGTCCAAGGACTCTAATTTTGAAGCCAAGGTTGCCAAGCTTGTTGAGCTGGGATTTGGAAGAGATGCAGTTGTCCAAGCTCTTCAATTATTCAATGGCAATGAGGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTGAAAACAGCATTTCTTANATTTGAAAGGATTAATTTATTACCTGAAACAAATTTTCAATTTTAGCCAATTTCATTACAGATTCTAAAAACCAAATCATAGAACTGATGGCATTTATTGTAATTGTTCATACTGTAAGGAATGTTTCCATTTGATTGACATAGGAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	265876	272329	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004190 aspartic-type endopeptidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001551.1	PF00240.18	ubiquitin	7	70	2.70E-12
Glyur000027s00001551.1	PF09668.5	Asp_protease	163	284	4.50E-55
Glyur000027s00001551.1	PF00627.26	UBA	356	390	4.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.330
SRR1783600	control	12.357
SRR1783602	moderate drought stress	7.929
SRR1811619	moderate drought stress	7.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.879
DRR006520	Root Summer glycyrrhizin high producing strain	26.125
DRR006521	Root Winter glycyrrhizin high producing strain	18.564
DRR006522	Root Winter glycyrrhizin high producing strain	18.364
DRR006523	Root Summer glycyrrhizin low producing strain	23.687
DRR006524	Root Summer glycyrrhizin low producing strain	23.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.524

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	73.367
SRR2868004	Drought Stress (root)	60.132
SRR2967015	Control (root)	54.741

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.196
SRR9715740	Leaf	35.969
SRR9715741	Leaf	36.116
SRR9715739	Root	10.583
SRR9715742	Root	18.514
SRR9715743	Root	18.554

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.167
SRR8749028	MeJA induced 9h	54.101
SRR8749029	MeJA induced 9h	27.587
SRR8749030	Uninduced	38.628
SRR8749031	Uninduced	13.782
SRR8749032	Uninduced	14.720

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.818
SRR8400027	Control - Root	38.464