Gene detail

Gene detail information of Glyur000027s00001548

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04160.1	8.00E-163	Subtilisin-like serine endopeptidase family protein
NR	XP_004500162.1	0	PREDICTED: subtilisin-like protease-like [Cicer arietinum]
COG	YP_003148385.1	5.00E-58	cell wall-binding protein [Kytococcus sedentarius DSM 20547]
Swissprot	tr\|Q9ZSP5\|AIR3_ARATH	0	Subtilisin-like protease SBT5.3 (Precursor)
trEMBL	tr\|A0A068B5J8\|A0A068B5J8_CICAR	0	Subtilase {ECO:0000313\|EMBL:AIC80772.1}

Sequence

Transcript Sequence

>Glyur000027s00001548.1
ATGGGTGCAGAACATCCAGATGTAGTGTCTGTGTTTTTGAACAAAGGGCATAANTTGCAAACCACCAGATCATGGGAATTTCTTGGGCTAGAGAGTAATGGAGTAGTTCCCAAAGACTCCATATGGGAGAAGGCAAGATATGGTGAGGGTACAATCATTGCTAACTTAGATACAGGTGTTTGGCCTGAATCTAAAAGTTTTAGTGATGAGGGAATGGGCCCTGTCCCATCAAGGAAATTGATAGGAGCAAGATTCTTCAGCAAAGGCTATGAATCAAAACATGGCAACATGGACAAATCCCTTCATACAGCACGTGATGTACTTNGCCATGGTACCCCAACATTGTCAATTGCTGGAGGCAATTTTGTTTCAGGAGCAAGTGTTTTTGGCTTTGGCAATGGCACTGCCAAGGGTGGCTCCCCAAGATCCCATGTTGCAGCCTACAAGGTATGCTGGCTAGGGACCATTGAGGTTGAATGCACTGATGCAGATATCATCAAAGCCTTTGAGGATGCTATAAATGATGGGGTTGATGTAATTTCCTGTTCCCTGGGTAAGTCCACTCCTGCAGAGTTTTTTGAAGATGGGGTTTCCATAGGGGCCTTCCATGCAGTTGCCAATGGTATAATAGTAGTTGCTGCTGGAGGCAATAAGGGACCGCAACCTGGAACCGTAACTAATGTGGCNCCATGGTTGTTCAGTGTTGGTGCTAGCACAATAGACAGAAACTTTGCTAATTATATAGCACTTGGTGACAAGAAGCACCTAATGGGAGCTAGTCTTTCTACAGGCTTGCCATCTGAGAAGTTCTACTCTTTGATCAGTTCTGTAGATTCTAAAGTTGCTAATGCAACAATNGAAGACGCGTTGGAACTCTTGATCCCAACAAGTCAAGGGGGCAAAATCCTTGTCTGCCTCCTAAGGGAACTAAATGGATTAACCTATGCAGAGGAGCAAGCTGTTTCTACAGGCGCAGTAGGACTAATTTTGGCAAATAATAAGCAACTTGGTAATGACATTATGGCATATGCTCATTCGTTGCCTACTTCACACATCAACTACACAGATGGTGAATATGTTTATTCCTACATCAAAGGCACCAAGACCCCCAAGGCTTACATGACCAGGGCNAGAACTCAATTGGGAGTAAAACCAGCTCCAGTAATAGCTTCATTCTCATCNAGGGGACCTAACCCCATCCAACCTATAATCCTCAAGCCTGACATCACTGCACCGGGTGTGGACATTATTTATGCATTCGTAGGGGCCACCAGTCCAACCGCAAGGACACTAGATGACAACAACAGACCAATTATGGATCAATCTAAGCAAGAAGCGACTCCATTTGCTTATGGTGCTGGACACATTCAACCAGAACTTGCAATGGACCCTGGACTTGTTTATGATCTAAACACTGTTGATTACTTGAACTTCCTATGTGCTCACGGTTACAACAAGACACAAATGAAAATGTTTTCTAGGAAGCAACACATTTGTCCAAAGTCTTACAGCATATTAGATTTTAACTATCCATCAATCACGGTGCCTAATCTTGGGAAACAACACTCTGTGAAAGTTACTCGTACGGTTACAAATGTTGGGTCAACAGGTACTACATATCATGTGCATGTGAAGGAACCTGATGGGGTTTCAGTCTTGGTTGAGCCAAGATCCTTGACATTTAATGAAGTTGGTGAAAAGAAGACATTCAAGGTTATTTTGAAGGGCTTAAAGGTAAGCAAAAAACATGCATCAGGTTATGTACATGTTTGGTGACTTGTGGTGGTCAGATGGTAGGCACAAAGTTATGAGCCCTATTGTAGTGAAGCATAGCTAAAGAAGCCTCTCAGTTTTCTAGTCAGAAGCTGTCATGTGTTTATATTCTAGCTTACACAAGCACTTTATATGGTTCATAGTGAACACGAAATTTCGCAGTTAATCTATAACTAATTAGCTATGGATTGTTTTTTTTTTTTGCTTCTACTTCGAGGAGTATCCCACTGCCTATACGACGGGGACTAATCTCCCGCGGGAGTTTGTTCGGCACCTCTAATGGGTGGCATCCCTCCTAGCTGAGATTTTTTTCATACCCAAAACTCGAACCCGAGACCTTGGTTAAGGGGTGAGAGACCTTAACCACTCACGCCAACCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	258438	262430	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001548.1	PF00082.17	Peptidase_S8	53	422	7.20E-18
Glyur000027s00001548.1	PF02225.17	PA	295	364	8.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.016
SRR1783600	control	0.017
SRR1783602	moderate drought stress	0.065
SRR1811619	moderate drought stress	0.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.165
DRR006520	Root Summer glycyrrhizin high producing strain	0.172
DRR006521	Root Winter glycyrrhizin high producing strain	0.059
DRR006522	Root Winter glycyrrhizin high producing strain	0.062
DRR006523	Root Summer glycyrrhizin low producing strain	0.154
DRR006524	Root Summer glycyrrhizin low producing strain	0.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.938

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.140
SRR2868004	Drought Stress (root)	0.519
SRR2967015	Control (root)	0.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.509
SRR9715740	Leaf	61.224
SRR9715741	Leaf	51.994
SRR9715739	Root	0.023
SRR9715742	Root	0.053
SRR9715743	Root	0.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.158
SRR8749029	MeJA induced 9h	0.095
SRR8749030	Uninduced	1.407
SRR8749031	Uninduced	2.556
SRR8749032	Uninduced	0.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.738
SRR8400027	Control - Root	0.514