Gene detail information of Glyur000027s00001546.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55760.1 | 6.00E-144 | BTB/POZ domain-containing protein |
| NR | AFK49561.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q680K8|Y1576_ARATH | 2.00E-180 | BTB/POZ domain-containing protein At1g55760 |
| trEMBL | tr|I3TAL9|I3TAL9_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK49561.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 249860 | 252751 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001546.1 | PF00651.26 | BTB | 157 | 259 | 7.20E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.140 |
| SRR1783600 | control | 16.198 |
| SRR1783602 | moderate drought stress | 15.365 |
| SRR1811619 | moderate drought stress | 15.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.982 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.650 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.487 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.098 |
| SRR2868004 | Drought Stress (root) | 55.549 |
| SRR2967015 | Control (root) | 64.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.303 |
| SRR9715740 | Leaf | 5.464 |
| SRR9715741 | Leaf | 5.835 |
| SRR9715739 | Root | 2.720 |
| SRR9715742 | Root | 16.196 |
| SRR9715743 | Root | 14.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.273 |
| SRR8749028 | MeJA induced 9h | 10.721 |
| SRR8749029 | MeJA induced 9h | 2.907 |
| SRR8749030 | Uninduced | 15.257 |
| SRR8749031 | Uninduced | 8.501 |
| SRR8749032 | Uninduced | 6.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.284 |
| SRR8400027 | Control - Root | 51.801 |