Gene detail

Gene detail information of Glyur000027s00001545

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55790.1	5.00E-77	Domain of unknown function (DUF2431)
NR	XP_003600430.1	0	hypothetical protein MTR_3g061070 [Medicago truncatula]
Swissprot	tr\|P0C8L4\|Y4648_ARATH	3.00E-61	Uncharacterized protein At4g26485
trEMBL	tr\|G7IY67\|G7IY67_MEDTR	0	DUF2431 domain protein {ECO:0000313\|EMBL:AES70681.1}

Sequence

Transcript Sequence

>Glyur000027s00001545.1
CGTGAGTGGTTAAGGCCTCTCGCCCCTTAATCAAGGTCTCGGGTTCGAGCCTTGGGTATGGAAAAAATCTCAGCTGGGAGGGATGCCACCCATTAGAGGTGCCGAACAAACTCCCGCGGGAGATTAGTCCCCGTCGTATAGGCGGTGGGATACTCCTCGAAAAGTAGAAGCAAAAAAAAAGATACGCAACGACGGTTAAAAAGGTTCAAAATGTTCACTACATGTCACGCTTGCTGTATACAAATGATGCTGTAGCAAGGGCGAGACTCTTGCACTTCCTTCCGTTTCAAAAATGGAAAACCCAGTGAAAGTGAAGAAGAGGGTGTGGGAGGAACAAGTGGTTATTGAACATTCTGAAGAAGAAGGAGAGGGTGCTAAATGGGTGACACACTATTGCAGTGATCATCAAATACTGTTGGTGGGTGAGGGTGATTTCTCCTTCTCCCTTTGCTTGGCCAAGTCTTTTGGTTCTGCTTCCAACATGGTGGCTTCTTCTCTTGACACCTATGATGATGTTATCAAGAAGTACAAGCATGCAAAGTCAAATTTAGATGAATTGCAGAAGCTGGGAGCATGCCTCTTACATGGAGTGGATGCAACTAAAATGAANTTTCATTCAGATTTACAAATGCGGAGATTTGATCGAGTTATATTCAACTTTCCTCATGCGGGCTTTCATGGGAAAGAAGATAACTTGTTGCTGATTAAGATGCATAAAGACCTTGTGTTTGGTTTCTTCGCAAATGCAAGTTGCATGCTTCGAGCCAATGGTGAAATCCATGTCAATCATAAAACCACACCTCCTTTTAGCTACTGGAACATAGAGGAGCTTGCCATGCAAAGTTGTTTGATGTTGATTGAGTGTAGTGACTTCAACAAAGAAGATTACCCGGGTTACAACAATAAGCGAGGGGATAGCAATAGATGTGATTTACCCTTTCCTCTTGGGAAGTGCAGCACATTCAAGTTCATTTACAATCCCAGAATTAGGAAAAACCATTTCAGGAGAAATAATCATATGAAGGTTTCTAGACAACAAGCAATTCTTCCATTTCAAGAGATTCAGACTATGGAGCAATTTCCAGCTCGAGTTGATCTCAATTATTTTCCTCAAACAAGCCTCTTTCCAAAATTGAATGAACAAGTGATATCAGGATTTGAGTTGAGAATGAGAAATGGATACACTCCAATCTCTAGGGAAGTGACATCGGTGTTTGACTTGACAAATGGATACACTTCAATCTCAAGGGACTACTTCAACAATGTTGCAGAAACACATGGAAGAGTTCCTTCTTCTGCCGACTATTATGCTCGTGATATGATACCAAACACTCAGAGATCGTTACAGCCAATGGAGTCATTGCAATCTTTGCAACCGCGGCGAACATCAACTAGTTATAGATATTCTCTAGCAGATCCCAATAGAAGAACCATGGACATTGCTTCTCCTTTGCCACTTGGTGCTAGAAATGAAGGCTACCAAGTCTTTGGTGGCAGCTCAAGTTATTTGCAAGAATCACTACAAAATGCGGAGAGGTCATGTTATTGTTGTGATGGACCAAGGCCTGACTTTACGAGATACAAATATAATGCTGACTTGCCTGGGAGAACTTTGAATGGTGAAATCTATGTTCAGAATGAGCTTCATCCATCTCTCGTGGTGGATCGGTTCAAACTTTCAAACAGAATTCCACACACACTATTTTGATGCCATGGAGAAGAATGTTTGTTGGGTACTGAAATTGCAGCCTGTGAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	240125	243134	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001545.1	PF10354.4	DUF2431	41	206	1.30E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.700
SRR1783600	control	4.728
SRR1783602	moderate drought stress	7.169
SRR1811619	moderate drought stress	7.256

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.044
DRR006520	Root Summer glycyrrhizin high producing strain	11.382
DRR006521	Root Winter glycyrrhizin high producing strain	1.384
DRR006522	Root Winter glycyrrhizin high producing strain	1.486
DRR006523	Root Summer glycyrrhizin low producing strain	9.017
DRR006524	Root Summer glycyrrhizin low producing strain	9.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.024
SRR2868004	Drought Stress (root)	0.479
SRR2967015	Control (root)	0.621

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.114
SRR9715740	Leaf	0.036
SRR9715741	Leaf	0.000
SRR9715739	Root	1.081
SRR9715742	Root	1.455
SRR9715743	Root	1.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.336
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.064
SRR8749030	Uninduced	0.145
SRR8749031	Uninduced	0.332
SRR8749032	Uninduced	0.143

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.737
SRR8400027	Control - Root	2.552