Gene detail information of Glyur000027s00001543.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 6.00E-24 | AP2/B3-like transcriptional factor family protein |
| NR | XP_004500187.1 | 1.64E-115 | PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 8.00E-27 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|G8A2Z4|G8A2Z4_MEDTR | 5.00E-113 | Reduced vernalization response {ECO:0000313|EMBL:AES85832.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 236236 | 238033 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001543.1 | PF02362.16 | B3 | 26 | 107 | 5.70E-12 |
| Glyur000027s00001543.1 | PF02362.16 | B3 | 213 | 283 | 1.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.005 |
| SRR1783602 | moderate drought stress | 0.044 |
| SRR1811619 | moderate drought stress | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.129 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.237 |
| SRR2868004 | Drought Stress (root) | 0.153 |
| SRR2967015 | Control (root) | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.053 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.199 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.015 |
| SRR8749028 | MeJA induced 9h | 0.165 |
| SRR8749029 | MeJA induced 9h | 0.144 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.794 |
| SRR8749032 | Uninduced | 0.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.071 |
| SRR8400027 | Control - Root | 0.050 |