Gene detail information of Glyur000027s00001542 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26490.1 | 1.00E-65 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003552986.1 | 1.18E-120 | PREDICTED: uncharacterized protein LOC100803431 [Glycine max] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 1.00E-07 | Protein YLS9 |
| trEMBL | tr|I1N072|I1N072_SOYBN | 4.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G08160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 234766 | 235527 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001542.1 | PF03168.8 | LEA_2 | 135 | 225 | 2.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.570 |
| SRR1783600 | control | 0.531 |
| SRR1783602 | moderate drought stress | 0.433 |
| SRR1811619 | moderate drought stress | 0.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.179 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.145 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.145 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.244 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.402 |
| SRR2868004 | Drought Stress (root) | 1.129 |
| SRR2967015 | Control (root) | 0.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.089 |
| SRR9715740 | Leaf | 0.169 |
| SRR9715741 | Leaf | 0.010 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.325 |
| SRR9715743 | Root | 0.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.733 |
| SRR8749028 | MeJA induced 9h | 2.922 |
| SRR8749029 | MeJA induced 9h | 2.478 |
| SRR8749030 | Uninduced | 0.745 |
| SRR8749031 | Uninduced | 45.646 |
| SRR8749032 | Uninduced | 32.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.437 |
| SRR8400027 | Control - Root | 0.647 |