Gene detail information of Glyur000027s00001536 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26555.1 | 5.00E-61 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| NR | XP_004500153.1 | 4.54E-117 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like isoform X2 [Cicer arietinum] |
| COG | YP_001839010.1 | 8.00E-12 | FK506-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| Swissprot | tr|Q944B0|FK161_ARATH | 2.00E-75 | Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (Precursor) |
| trEMBL | tr|I1N077|I1N077_SOYBN | 1.00E-116 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00027 | 181777 | 184039 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000027s00001536.1 | PF00254.23 | FKBP_C | 121 | 226 | 1.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.221 |
| SRR1783600 | control | 3.467 |
| SRR1783602 | moderate drought stress | 4.701 |
| SRR1811619 | moderate drought stress | 4.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.897 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.969 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.042 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.367 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.503 |
| SRR2868004 | Drought Stress (root) | 24.696 |
| SRR2967015 | Control (root) | 32.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.693 |
| SRR9715740 | Leaf | 25.825 |
| SRR9715741 | Leaf | 22.673 |
| SRR9715739 | Root | 1.295 |
| SRR9715742 | Root | 1.877 |
| SRR9715743 | Root | 0.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.415 |
| SRR8749028 | MeJA induced 9h | 33.593 |
| SRR8749029 | MeJA induced 9h | 22.717 |
| SRR8749030 | Uninduced | 35.846 |
| SRR8749031 | Uninduced | 30.357 |
| SRR8749032 | Uninduced | 31.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.009 |
| SRR8400027 | Control - Root | 22.365 |