Gene detail

Gene detail information of Glyur000027s00001533

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26570.1	2.00E-118	calcineurin B-like 3
NR	XP_004500149.1	9.11E-162	PREDICTED: calcineurin B-like protein 3-like [Cicer arietinum]
Swissprot	tr\|Q75LU8\|CNBL3_ORYSJ	5.00E-153	Calcineurin B-like protein 3
trEMBL	tr\|G7IXS6\|G7IXS6_MEDTR	3.00E-161	Calcineurin B-like protein {ECO:0000313\|EMBL:AES70648.2}

Sequence

Transcript Sequence

>Glyur000027s00001533.1
ATGTGTGGGTTGTATTCTATCTGCATCGACCGTATCACTTTCGTCACCTTCACACACACACACACACACACACACAGATTCGTCCCAATCACCCCTAGTTGCTCAGAACCCTGTAAATTAACCAAAGGCTCAACCATTCAAAACTCTATTTCCTTTATCTTCTACACACACGCCCTCTCTCTGTTTTGTTTTTTTGTTTGTGCTGATCCTCTGCCTCCAAGACCTTGCCATTTGGGATTGGTCACCAGAAGTTGGAAATGGTTAAAAGAGATATCATGTTGCAGTGCTTAGAGGGATTTAAGTCTTTACTTGCTTCCCTATTGCGTTGTTGTGACCTTGATATATATAACCAGTCAAGAGGCCTTGAAGATCCTGAAATTCTTGCAAGGGAGACAGTGTTCAGTGTTAGTGAAATAGAAGCACTGTATGAGCTCTTCAAAAAGATCAGCAGTGCTGTAATTGATGATGGGCTGATTAACAAGGAAGAGTTTCAATTGGCGTTGTTCAAGACAAATAAAAAAGAAAGTTTGTTTGCTGATCGGGTGTTTGATTTATTTGACACAAAGCACAATGGAATACTTGGTTTCGAAGAGTTTGCTCGTGCCCTCTCCGTTTTCCATCCGAATGCTCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAGAGGCAAGAGGTGAAGCAAATGGTAGTTGCTACGCTTGCGGAATCTGGTATGAACCTATCAGATGATGTTATAGAAAGTATAATTGACAAGACTTTTGAGGAAGCAGATACAAAGCATGATGGCAAGATTGACAAGGAGGAGTGGAGAAACCTTGTTTTGCGCCATCCATCACTTTTGAAGAACATGACCCTTCAATATCTCAAGGACATCACCACAACATTCCCAAGCTTTGTATTCCATTCACAAGTAGATGATACTTGAAGGGCAAGTATTTAGTTGATAAATTTTCACCTTTGGTTTCTTTGCCTTTGGGCTGAAGAGCCACCTCTCGTGTTAAGGAAGTATAGTAGATTGCTTTGATTACCTTACATTGGCTATATATCTTTGAGTAGGATATTTGGTTTCATGGATTCATTTGCTGTGGTTAAAGTTTCTCAAGACACCTTTGATGAGTTCTGCTTAAATCTTCCTGAGATATTTGTGGTTCCCATTTCTTCAAAAAGGATTTCAGTGATGAGCAAGTATATGGAACTTCCTTTTGTGGCATGGAATGAGAATGAATTGTTTCATGTCAAATTTTGACATAACATTGTGAAGTGAAAATTTGTATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	170105	174365	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001533.1	PF13833.1	EF-hand_8	69	117	9.60E-10
Glyur000027s00001533.1	PF13499.1	EF-hand_7	132	197	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.473
SRR1783600	control	10.658
SRR1783602	moderate drought stress	11.969
SRR1811619	moderate drought stress	11.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.671
DRR006520	Root Summer glycyrrhizin high producing strain	27.706
DRR006521	Root Winter glycyrrhizin high producing strain	38.808
DRR006522	Root Winter glycyrrhizin high producing strain	37.551
DRR006523	Root Summer glycyrrhizin low producing strain	29.911
DRR006524	Root Summer glycyrrhizin low producing strain	30.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.847
SRR2868004	Drought Stress (root)	42.547
SRR2967015	Control (root)	42.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.462
SRR9715740	Leaf	56.540
SRR9715741	Leaf	50.505
SRR9715739	Root	9.017
SRR9715742	Root	13.901
SRR9715743	Root	15.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.108
SRR8749028	MeJA induced 9h	28.312
SRR8749029	MeJA induced 9h	23.495
SRR8749030	Uninduced	31.586
SRR8749031	Uninduced	16.594
SRR8749032	Uninduced	21.265

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.047
SRR8400027	Control - Root	34.385