Gene detail

Gene detail information of Glyur000027s00001517

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60620.1	3.00E-136	RNA polymerase I subunit 43
NR	XP_004498147.1	0	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like [Cicer arietinum]
COG	YP_003650606.1	8.00E-29	DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM 11486]
Swissprot	tr\|Q39211\|NRPB3_ARATH	5.00E-34	DNA-directed RNA polymerases II, IV and V subunit 3
trEMBL	tr\|I1N089\|I1N089_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G08360.1}

Sequence

Transcript Sequence

>Glyur000027s00001517.1
AAATGAAATTGGACCAAAAAAAAGAAGTTTGACCAAAAGAAGAAGAAGAAGATGAAGCAAAAAAACGACGCCGTTTTGACTTTCGTCGTTGTTGAATCATAAACCCTAAACCCTTGCTTCTGCTTTCTTCATACTTCTGCAACCAAGTGCCAACCCACGAAGAAGCTACAGCTGAGAGAGAGAGAGAGAGACGTAGGACAAAGCACAATAACAATGTCTGAGGAAGACGATTCGATGTCGGAGATTGAAGAACAGGAACAGAAGGAGAATGGTGGAGGACTCGATTACATAATGAGCTTAGAGAGCGTTCCATCGAAGCTCCCTCCACACCTCGAACTCCTCAGGACTCGCGTTCTCTGCAACAACGATGCTCCTCAGCATACAGATACCATACAATATTCTGGTGCTTATNCAGCGTTAGGAGTTGATAATAGTGTACGGTTGGATAATTTCTGTCAAAACTTCAAGGTTGAAGTGAAATGGATCGAGAAGAATGACATGGAGTTTGATATGATTGGTATCGATCCAGCAATTGCCAATGCTTTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCCATTGAAAGAGTATATATTGCAAACAATACATCAATTGTACAAGATGAAGTTCTTTCCCATAGATTGGGCCTCATTCCAATCAGTGCTGATCCCAGGCTATTTGAATATCCAGACAATGCTGGAGATGACAAGAATGAAAAGAACACTATCGTCTTCAAACTACATGTTCGTTGTGAAAAGGGTCAGCCTCGCATTACCGTGAAATCAGATGAACTAAAGTGGTTACCTAATGGGAGCGAGCTTATCGCTGAAGATGCCAAACCAAATGCAGGCTCAAAGCCAAAAACTTTTACATCTTTTAGCTGCAGCCAAGACTCACTTCCTGAATTTTCCAGCAATCCACTTGGTCCTAAAGAGGAAAATTTGAAAATTATATTAGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGCATTGGTAAGATACATGCAAAATGGTCCCCGGTTGCCACTGCTTGGTATCGAATGCTTCCCGAGGTTGTACTCTTGGAAGATGTTGAGGATGAGCTGGCTGTAGAACTTAAAAAGAAATGTCCAAAAGAAGTGTTTGATATTGAAGATATTGGAAAAGGTAGAAGAAGGGCAACCGTAGCCAAACCACGAGAATGCACTTTGTGTAGGGAATGCATCAGAGGGGGGAAAGAATGGGAGGATCGTGTATCATTACGTCTTACCATTGAATCAACAGGAGCACTACCCCCTGATGTGCTCTTTACTGAAGCTGTGAAGATTCTGGAAGACAAGTGTGAACGTGTGATTACTGAGCTCTCTTGATTCTCCTTTTTTGCCATGTCTTAAGAATGAATGAAAAGGAAAAATGTTGTACATGATCAATTCTGTTATTGTTATTATTTCATTTTTGTTTTCTGTGGACAAAATATTTTGTCTTATGATATGAAAGCTCATAGTTAAGCAGTGCATGTCTGCATGGCCATGCCCATGATCTGTTTTGTTCGTACTATATCCAAATCTAGTAGCTTAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00027	95352	100078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000027s00001517.1	PF01193.19	RNA_pol_L	96	379	9.70E-16
Glyur000027s00001517.1	PF01000.21	RNA_pol_A_bac	127	276	5.60E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.179
SRR1783600	control	10.261
SRR1783602	moderate drought stress	8.906
SRR1811619	moderate drought stress	8.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.272
DRR006520	Root Summer glycyrrhizin high producing strain	16.329
DRR006521	Root Winter glycyrrhizin high producing strain	7.012
DRR006522	Root Winter glycyrrhizin high producing strain	6.787
DRR006523	Root Summer glycyrrhizin low producing strain	16.484
DRR006524	Root Summer glycyrrhizin low producing strain	16.463
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.071
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.022

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.578
SRR2868004	Drought Stress (root)	18.989
SRR2967015	Control (root)	14.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.106
SRR9715740	Leaf	10.419
SRR9715741	Leaf	6.474
SRR9715739	Root	2.593
SRR9715742	Root	9.545
SRR9715743	Root	9.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.159
SRR8749028	MeJA induced 9h	33.016
SRR8749029	MeJA induced 9h	33.095
SRR8749030	Uninduced	2.813
SRR8749031	Uninduced	1.297
SRR8749032	Uninduced	1.868

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.539
SRR8400027	Control - Root	20.466