Gene detail

Gene detail information of Glyur000026s00001960

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05010.1	1.00E-132	ethylene-forming enzyme
NR	XP_003549632.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase-like [Glycine max]
COG	YP_003514298.1	4.00E-27	2OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728]
Swissprot	tr\|P31237\|ACCO_ACTDE	0	1-aminocyclopropane-1-carboxylate oxidase
trEMBL	tr\|I1MR21\|I1MR21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01330.1}

Sequence

Transcript Sequence

>Glyur000026s00001960.1
ACAGCAAATAATTGCAAAGCCTATTAATAGTAGAGACTGTAGAGTGTGAGAGAAAAACAGGAGAAAAAAGGAAAAAGAAGAAGAAGAAGCAAATGGAGAACTTTCCAGTAGTTGACATGGGNAAGCTCAACACTGAAGAGAAAGCAACAACCATGGAAATGATAAAAGATGCCTGTGAAAACTGGGGTTTCTTTGAGTTGGTGAACCATGGGATATCACTAGAGTTGATGGACACGGTGGAGAGGCTGACAAAAGAGCACTACAAGAAGTGTTTGGAGCAAAGGTTCAAAGAAATGGTAGAGACCAAAGGCCTGGACTCTGCTCAGTCTGAGATCAATGACTTGGACTGGGAAAGCACCTTCTTTTTGCGCCACCTTCCTGTCTCTAACATCTCAGAGATCCCTGATCTTGATCATGATTACAGGAAGGCAATGAAGGAATTTGCACTGGAACTGGAGAAGCTGGCAGAGCTACTCCTTGACTTGCTGTGTGAGAATCTTGGGCTAGAGAAAGGGTATCTGAAGAAGGTCTTCTATGGGTCCAAGGGCCCAAATTTTGGNACCAAAGTTAGCANCTACCCNCCNTGTCCCAAGCCAGATCTCATCAAGGGCCTCAGAGCCCACACAGATGCTGGTGGCATCATTCTACTCTTCCAAGATGACAAGGTCAGTGGACTTCAGCTCCTCAAAGATGGCCAGTGGATTGCTGTCCCACCAATGCGCCATTCCATTGTCATCAACCTTGGGGACCAACTTGAGGTAATTACCAACGGCAAGTACAAGAGTGTGATGCACCGCGTAATTGCTCAAACAGATGGTACCAGAATGTCCATAGCCTCATTTTACAACCCAGGAAGTGATGCACTTATCTCTCCAGCACCAGCCTTGGTGAAGGAAGATGAGACAAGCCAAGTCTACCCGAAATTTGTTTTTGACGATTACATGAAGCTCTATGCAGGCCTCAAATTCCAGGACAAAGAGCCAAGATTTGAAGCTATGAAGGACTTGGAGTCCAGCATTAATAATCTAGGTCCCATAGCAACTGTCTAGGCCTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	576531	578243	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05933	E1.14.17.4	EC:1.14.17.4	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001960.1	PF14226.1	DIOX_N	5	96	1.70E-17
Glyur000026s00001960.1	PF03171.15	2OG-FeII_Oxy	158	253	1.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.651
SRR1783600	control	9.252
SRR1783602	moderate drought stress	14.926
SRR1811619	moderate drought stress	14.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.166
DRR006520	Root Summer glycyrrhizin high producing strain	9.783
DRR006521	Root Winter glycyrrhizin high producing strain	1.161
DRR006522	Root Winter glycyrrhizin high producing strain	1.783
DRR006523	Root Summer glycyrrhizin low producing strain	23.014
DRR006524	Root Summer glycyrrhizin low producing strain	24.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.725
SRR2868004	Drought Stress (root)	33.297
SRR2967015	Control (root)	27.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.125
SRR9715740	Leaf	0.578
SRR9715741	Leaf	0.153
SRR9715739	Root	1.216
SRR9715742	Root	16.453
SRR9715743	Root	14.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.017
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.308
SRR8400027	Control - Root	17.894