Gene detail

Gene detail information of Glyur000026s00001954

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57190.1	0	phosphatidylserine decarboxylase 2
NR	XP_004485545.1	0	PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cicer arietinum]
COG	NP_603252.1	8.00E-62	phosphatidylserine decarboxylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Swissprot	tr\|F4KAK5\|PSD2_ARATH	0	Phosphatidylserine decarboxylase 2 alpha chain
trEMBL	tr\|I1KUF4\|I1KUF4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G19310.1}

Sequence

Transcript Sequence

>Glyur000026s00001954.1
GTGTCTACATATGGTCGTCACGTGCCAAGGCTTCCCAGTTCCCAAATTCCCTGGCAGCAGTGGCACTGACGGTGTAACTGCAACTTNCCTGCAAAGTTCGTCAGAAAAATCATCAAACACTAGGAACCGTTTCATTGGCGAATTGNCAACACAGATATTTTTTATTCTATGGCGAATACACCTCCGCCGAAAAAAACAACGTATTATCATTATCAATATNAATAGAGAGAGTAGATATTGTGAAAGCGTTGAGTTGGTTTTGCTTAGGTGGAGCGCACTCGCACTCGGAAAAGCGATAGAGAGACTCACTCAGCAATTCAAGCAAGGCATCAATCACACAAAACACTTGAATTGTTTTGATTAGTCAGCGACTGAGTGTGAAAGAGCATTGCAGAGGAAGAGCATGGGTCACCAACATTCCAAATTGTCCTCTTCCGAAGGGAAAGGATCGCGTCTTGCTCGTCTCAAACAGCGTCTTCACCTTCGCCGCAGAAATGGTAACGCCTCCTCCTCCGCCTCCGGTAAAAAGCTTCTCTCTGCCGACAACTTCGCCGGAATCGCTCTCCTCACACTCCTCCGGGCGGAGATGCAGTTCAAGGATAAATGGATTGCGTGCCTTTCTCTCGGAGAACAGACTTTCCGTACAAAGACCTCTGAACAGACAGATAAACCGGTTTGGAATTCCGAAAAGAAACTTCTTTTGGAACAGAACGGGCCTCATCTTGCAAGAATTTCTGTCTTCGAGACCAACAAACTGTCCAGCAATACTCTTGTTGGATATTGTGAGATTGATCTGTTTGAATTTCTGACCCGGGATTCTGATTCTGACATTGAAATATTCGACCTGTTAGATCCATCAGTTTCTGGAAAAGTTGTTGGCAAGATTTCCATTTCATGCTCTGTAGAGGATCCAGTTGAAACAGAGAAAGGCTTTGTTAGACGCATTCTATCCATTGTGGACTACAATGAAGATGGGATGCTTTCACTTTCTGAATTTTTTGACCTAATTGATGCTTTTGGCAATCAGTTAGCAGCCAGCAAGAAAGAGGAGCTGTTCAAAGCTGCTGACAAGAATGGAGATGGTGTTGTGAGCATGGATGAATTGGCTGCCCTTCTTGCTTTTCAACAAGAAAAGGAGCCGTTATTGTATTGCTGCCCTGTTTGTGGTGAGGTTCTTCAGATTTCTGACCAGTTGAACAGCATGATNCACTTAACTCTCTGTTTTGACGAAGGGACTGGAAATCAGGTGATGACTGGAGGATTCTTAACAGATAAGCAGGCTTCATATGGGTGGTTCTTCAAACTGAGTGAATGGGCCCATTTCTCATCCTATGATGTTGGTATTCGATCTGGATCAAGTGCTTCCCATATTCTGGTGTATGATCGGAAGTCACAAAGGCTTGTCGAAGAACTAATTGACAAAAAGATTGTTTTGTCAATGAGAGCTATTTATCAATCAAAAATAGGTCTTGGTCTAATGGACATAGGGGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAGGGAGCACAAATGGATTCACCTGAATCGTCCGCTGATATACCAAAATTTATTGAATCTTTTAAAGATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAGACATTCAATGAATTTTTCGTTAGAGAGTTAAAGCCTGGTTCAAGACCAATTGCTTCTGCTGAACATGATAACATTGCTGTATGTGCTGCTGATTGCCGTCTAATGGCATTTAAATCAATTGACGATGGTACAAGATTCTGGATTAAGGGTAGAAAGTTTTCAGTTCAAGGCCTTTTGGGGAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGGACAATAGTAATTTTCCGTTTGGCACCACAGGATTATCACCGTTTCCATTTGCCTGTATCAGGAACTATTGAGCAATTTGTAAATATCCCTGGATGCCTATATACAGTGAATCCCATCGCTGTAAATAGCAAGTACTGTAATGTCTTCACGGAGAATAAGCGAGCTGTTTCAATAATTTCAACTGTAGATTTTGGAAAGGTGGCATTTGTTGCAATAGGAGCTACAATGGTTGGTAGCATTACTTTTACTAAGAAAAAGGGCGACTATGTCAAGAAGGGAGATGAGTTTGGATATTTCTCCTTTGGTGGAAGCACTGTTATTTGTGTTTTTGAAAAGAATTCAATTGCAATTGACGAAGACCTTCTAGCAAATAGCACCAGATCACTGGAGACCTTAGTTTCTGTGGGGATGAGATTGGGCGTCTCCACGAGGAAAATGTCTTGATATTGGGTTGACTAACTTGGAAATGTTGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	539456	548620	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01613	psd, PISD	EC:4.1.1.65	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008654 phospholipid biosynthetic process

molecular_function

GO:0004609 phosphatidylserine decarboxylase activity

GO:0005509 calcium ion binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001954.1	PF00168.25	C2	70	127	0.00046
Glyur000026s00001954.1	PF13499.1	EF-hand_7	179	237	4.20E-09
Glyur000026s00001954.1	PF02666.10	PS_Dcarbxylase	413	622	2.50E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.946
SRR1783600	control	8.889
SRR1783602	moderate drought stress	13.173
SRR1811619	moderate drought stress	13.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.672
DRR006520	Root Summer glycyrrhizin high producing strain	18.448
DRR006521	Root Winter glycyrrhizin high producing strain	25.210
DRR006522	Root Winter glycyrrhizin high producing strain	24.344
DRR006523	Root Summer glycyrrhizin low producing strain	20.446
DRR006524	Root Summer glycyrrhizin low producing strain	21.153
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.470
SRR2868004	Drought Stress (root)	29.932
SRR2967015	Control (root)	36.569

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.933
SRR9715740	Leaf	27.935
SRR9715741	Leaf	32.748
SRR9715739	Root	3.626
SRR9715742	Root	11.179
SRR9715743	Root	9.495

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.462
SRR8749028	MeJA induced 9h	22.259
SRR8749029	MeJA induced 9h	16.664
SRR8749030	Uninduced	12.802
SRR8749031	Uninduced	5.252
SRR8749032	Uninduced	6.414

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.687
SRR8400027	Control - Root	25.815