Gene detail

Gene detail information of Glyur000026s00001945.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43710.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004485538.1	0	PREDICTED: histidine decarboxylase-like isoform X1 [Cicer arietinum]
COG	YP_001865119.1	8.00E-116	histidine decarboxylase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q6ESZ9\|SDC1_ORYSJ	0	Serine decarboxylase 1
trEMBL	tr\|I1MDT8\|I1MDT8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05630.1}

Sequence

Transcript Sequence

>Glyur000026s00001945.1
ATGCGTGCGGGGAACAGTGGTGCTCTTGTCGGCTGGTGTTTCGGTGTTGTGGGTAACAAAATGGTTGGAAGTGTTGATATTTTGGCTGACGATTTGAGCATCAATGGAGCAGTCGAACCATTGCCTGAGGATTTTGATGCGGCGGCCATTATCAAAGATCCCGTGCCTCCTGCAGTTGGAGACAATGGCATTGTCAAGGAGGAGGCTCGGGTCAACATGGAAAAAGAGAAGAGAGAAATAGTGCTGGGAAGAAATATTCATACCATGTGTCTAGAAGTCACGGAGCCCGACGCAGATGATGAGGTTACTGGGGATCGAGAAGCTTTTATGGCTAGCGTGCTGTCCAAGTACAAAAGATCCTTAACTGAAAGGACAAAGCATCATTTAGGCTACCCTTATAATTTGGATTTCGACTATGGTGCACTCTCTCAACTGCAGCACTTCTCCATAAACAACCTTGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGACAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTGTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTATTCTGTTTTTAAAGCTGGTCGTATGTACAGAATGGAATGTGTGAAGGTTGAGACTCTTTGCTCTGGTGAGATTGATTGTGATGATTTCAAGGCCAAGCTTCTTTGTCACCAGGACAAGCCAGCAATTATAAATGTGAACGTAGGCAAGTTTCTCCATCATTGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGGTTCTACATCCATGTTGATGGGGCNTTGTTTGGTCTCATGATGCCTTTTGTGAAACGAGCTCCAAAGGTTACTTTTAAGAAGCCTATTGGCAGTGTAAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCATATTAATGCTCTTTCCAGGAATGTGGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGTCGGAATGGCCATGCTCCCATATTCCTTTGGTATACTTTGAACCGGAAAGGATACAGAGGTTTTCAGAAAGAAGTACAGAGATGCTTGCGGAATGCACACTACTTCAAAGACCGCCTTGTTGAGGCTGGGATTGGTGCAATGCTTAATGAGCTGAGCAGTACGGTTGTATTTGAGCGGCCACATGACGAGGAATTTATACGCAAGTGGCAGTTGGCATGCAAGGGGAACATCGCGCATGTAGTGGTGATGCCAAACATCACTATTGAGAAGCTTGATGATTTTCTAAACGAGCTTATGCAGAAGCGTGCTACTTGGTTTCAAGATGGGAAGGATCAACCTTATTGTATAGCATCAGATGTAGGTGAAAAACATTGCCTTTGTGCTCTGCATAAGTAATTGTAGCATCCAATACAATCTAGAGTTTACCACTAGTTGTTTTCTCGAGTTTTTATGCAGTGTTTTATCAGCGCACTTTGATACACTTAATAACATTTTTTTTGGTCATGATGCACTTAATAACATTTAGAATCATCTTTGCTTCCCATACTTACTTAGCCTATATTGTTATTATTTTTACTTAGCCCGTTAATTGTTATTGTTTGGTTTCCTCATTTAAAGCAATAGTTGCCAAGGTAGCTAAAATAAAATAGATGGATGAAAATTTACAAAAAGAAAGCAATAATGATGAAGATAAAAATGGTTAGGGCATTAATCACGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	514511	520244	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01590	hdc, HDC	EC:4.1.1.22	Histidine metabolism	map00340

Gene Ontology

biological_process
GO:0019752 carboxylic acid metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016831 carboxy-lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001945.1	PF00282.14	Pyridoxal_deC	169	431	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.861
SRR1783600	control	52.090
SRR1783602	moderate drought stress	34.763
SRR1811619	moderate drought stress	35.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	98.905
DRR006520	Root Summer glycyrrhizin high producing strain	96.774
DRR006521	Root Winter glycyrrhizin high producing strain	86.916
DRR006522	Root Winter glycyrrhizin high producing strain	84.507
DRR006523	Root Summer glycyrrhizin low producing strain	60.288
DRR006524	Root Summer glycyrrhizin low producing strain	59.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.387

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	72.132
SRR2868004	Drought Stress (root)	60.925
SRR2967015	Control (root)	65.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.914
SRR9715740	Leaf	46.829
SRR9715741	Leaf	55.663
SRR9715739	Root	68.027
SRR9715742	Root	78.733
SRR9715743	Root	75.552

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.211
SRR8749028	MeJA induced 9h	20.414
SRR8749029	MeJA induced 9h	23.234
SRR8749030	Uninduced	17.951
SRR8749031	Uninduced	20.063
SRR8749032	Uninduced	13.579

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.086
SRR8400027	Control - Root	72.312