Gene detail information of Glyur000026s00001941 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43660.1 | 2.00E-48 | Vacuolar iron transporter (VIT) family protein |
| NR | XP_003619938.1 | 3.07E-103 | Nodulin-related integral membrane protein DUF125 [Medicago truncatula] |
| COG | YP_003524487.1 | 8.00E-31 | hypothetical protein Slit_1871 [Sideroxydans lithotrophicus ES-1] |
| Swissprot | tr|Q9M2C0|VITH4_ARATH | 8.00E-89 | Vacuolar iron transporter homolog 4 |
| trEMBL | tr|A0A072TSY7|A0A072TSY7_MEDTR | 1.00E-103 | Vacuolar iron transporter-like protein {ECO:0000313|EMBL:KEH16670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 490775 | 491449 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001941.1 | PF01988.14 | VIT1 | 55 | 123 | 1.80E-22 |
| Glyur000026s00001941.1 | PF01988.14 | VIT1 | 118 | 218 | 8.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.242 |
| SRR1783600 | control | 5.803 |
| SRR1783602 | moderate drought stress | 6.198 |
| SRR1811619 | moderate drought stress | 6.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.154 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.506 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.600 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.463 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.703 |
| SRR2868004 | Drought Stress (root) | 26.395 |
| SRR2967015 | Control (root) | 42.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.505 |
| SRR9715740 | Leaf | 2.139 |
| SRR9715741 | Leaf | 1.984 |
| SRR9715739 | Root | 2.085 |
| SRR9715742 | Root | 10.799 |
| SRR9715743 | Root | 6.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.300 |
| SRR8749028 | MeJA induced 9h | 0.860 |
| SRR8749029 | MeJA induced 9h | 2.572 |
| SRR8749030 | Uninduced | 5.991 |
| SRR8749031 | Uninduced | 7.421 |
| SRR8749032 | Uninduced | 18.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.580 |
| SRR8400027 | Control - Root | 21.277 |