Gene detail information of Glyur000026s00001939 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12110.1 | 0 | actin-11 |
| NR | XP_003547582.1 | 0 | PREDICTED: actin-101-like [Glycine max] |
| COG | YP_003266114.1 | 3.00E-95 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|P30173|ACT13_SOLTU | 0 | Actin-101 |
| trEMBL | tr|I1MDT4|I1MDT4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 477836 | 482108 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001939.1 | PF00022.14 | Actin | 5 | 377 | 9.20E-160 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 205.182 |
| SRR1783600 | control | 206.376 |
| SRR1783602 | moderate drought stress | 122.980 |
| SRR1811619 | moderate drought stress | 122.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 255.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 253.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 121.669 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 118.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 185.607 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 185.825 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 224.452 |
| SRR2868004 | Drought Stress (root) | 243.433 |
| SRR2967015 | Control (root) | 224.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 76.453 |
| SRR9715740 | Leaf | 63.452 |
| SRR9715741 | Leaf | 73.219 |
| SRR9715739 | Root | 310.285 |
| SRR9715742 | Root | 217.989 |
| SRR9715743 | Root | 245.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 178.787 |
| SRR8749028 | MeJA induced 9h | 118.945 |
| SRR8749029 | MeJA induced 9h | 123.112 |
| SRR8749030 | Uninduced | 69.111 |
| SRR8749031 | Uninduced | 89.564 |
| SRR8749032 | Uninduced | 57.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 204.632 |
| SRR8400027 | Control - Root | 217.992 |