Gene detail

Gene detail information of Glyur000026s00001935

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25270.1	3.00E-72	nodulin MtN21 /EamA-like transporter family protein
NR	XP_003593115.1	0	Auxin-induced protein 5NG4 [Medicago truncatula]
Swissprot	tr\|Q4PT23\|WTR6_ARATH	7.00E-87	WAT1-related protein At1g25270
trEMBL	tr\|G7IL78\|G7IL78_MEDTR	0	Auxin-induced 5NG4-like protein {ECO:0000313\|EMBL:AES63366.1}

Sequence

Transcript Sequence

>Glyur000026s00001935.1
TTTAATTGTACATGTGACGCTGCCGTTGACGACTACGTACTGAGTACTGATGATGATGATGACGAAGATGAAGAACACGTGCAATGCGGTGCAGGGGTTGAAGCCAACGCTATCGCTTTTGCTGGGGTTAATGTTCTCTACAAGCTTGCCGTTAACGATGGCATGAACCTCAGGGTTGTTGTTGCCTACCGTTTTGTATTCGCAACCGCTTTCATAGCCCCACTTGCTCTCATTGTTGAAAGGAAGACGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTGTGCGGTTTATTTGGAGGAACTCTAGCTCAAAACTTCTACTTAGAGGCCCTGTCTTTAACTTCTGCAACATATGCATCCGCCATGGCCAACCTCATACCAGCCATAACCTTTATTATGGCCGTTTCCTTCGGTTTGGAAAAATTGAATTTGAGAACGGCAGCAGGGAAGGCCAAGATACTCGGTACAATGATCGGAATTGGTGGGGCAATGGTGCTGACTTTCGTTAAAGGTGTGGAAATCAAGATGGGTTCCTCCCACTTAAACCTTTTGCATCACCCAAACGGTGCGCATCCACACACTACCACCGGTGGTAAANCCGTTTTGGGTTCTCTGTGCTCCTTGGCTAGTGGCATCTCTTACGCATCCTGGCTCATTGTTCAGGCAAAGATGAATCAAAGATACCCGGCTATTTACTCAAGCACCGCGTTGATGTCTTTCTGGGGGTCACTGCTATCCATTGTGCTTGCTCTCTGCTTTGAGAGGGATTGGAGTCAGTGGAGGTTGGGTTGGAANATTAGGCTTCTAACTGCTGCTTATTCGGGTATAGTGGTTTCTGGAGTAATGGTGGTCGCAATTTCATGGTGTGTACACATGAGAGGCCCATTGTTTGCCTCTGTTTTTAGCCCACTAATGCTTGTGATTGTGGCCTTGGCTGGTTCTACGATGTTGAATGAGAACCTACACCTTGGAAGCATAATTGGAGCAGTGTTGATTATATGCGGCTTATATGCGGTTTTATGGGGTAAAAGCAAAGAGATGAAGAAGAAAAATCAACTAGTGCCGTCAGAAAGCCCGCACGATCAATCCGATACAGTCGAAATAGTGGTGAGGTCTGTAGACGTAAAAGATAAAAGCATCCACGATAACTGCGATGTGCACGGTAATACCGTACAAGAGGTTAGGGATAATACTATTGAAGATTCATCGGTAGATCATGGACATGAAGTGCAAAGTGCACGTGTACCCAATCAGGGAAAAGAACTAGGAGGAGAAGGAGAAGGAGAAATTTCTCGGAAAGTAGTGGATGGGTTGAAGCCAGCCCTTCTGATGTTGGTGGTACAGATTGCACTTGCTTCTGTGAATGTGCTCTACAAACTTGCCATAAACGATGGAATGAGCGTTAGAGTAGTTACTGCTTACCGTCTCATTTTTGCAGCAGCTTCCACTATTCCACTTGCCCTTTTTTTTGAAAGGAAGAACAGACCAAAGCTGACTTGGAGGGTAGTTTTTATGTCATTCTTTTGTGGTCTATTTGGGGGAAGTTTATTCCAAAACCTTTATTTTGAGTCCTTGGCATTGATATCGGCAACATTTGCTTCTGCTGCTTATAATCTCATTCCTGCCGTCACTTTTATCTTGGCCGTCTCCTGCGGTTTCGAAAGATTAAATTTGCAAACGGCGGCAGGCAAAGCTAAAGTGTTGGGGACGATAACAGGAATTGGCGGGGCAATGCTGCTGACCTTTCTCAAAGGTATTGAAATTAACATTTGGACGTTCCACATTAACCTCTTGCACAAAAAGGGCCAAACGGGAACACTAAATGGTGACTCTGGTAGTAAATTGCTGGGTGTTTTTTGTGGTCTTGGAAGCTGCTTCTGTTTTGCATTATGGCTCATCATTCAGGCTAAGATGAGCAAAGAATATCCAAACCATTACTCAAGTACAGCTTTGATGTCCTTAATGGGGGCAATACAAGCCACTGTCTTTGCCCTTTGTGTTGACAAGGATTGGAGCCAATGGAGGTTGGGTTGGAGTATTAGGCTTCTAACTGCAGCATATTCAGGAATTGTGGCCTCTGGAATTGTGGTTATTGTCATTGCATGGTGTGTAAGGATGAGAGGCCCACTGTATGCTTCTATTTTCAATCCTCTGATGCTTGTGCTTGTGGCAATTGCTGGTTCCTTGATGTTGGATGAGAACCTCTACTTGGGAAGTGTATTTGGAGCAGTGCTAATTGTGATTGGATTGTACATGGTGTTATGGGGGAAGAGCAAAGAAGAGAGAAAGGTGACCGATTTAGAAATCACTCCAGAAATCGAAGAAATTGAGGTTGTTGTCGCGTCCACCAAAGTAGATCATCATGATAACATTAACTGCAGCAACAACAGCCACGCATGCAGTAAAAGCAGCCATATTGTTAACAAGGATCATGATAATAATTCATCAAAAACAATGAAGGGGGTACGAATGAGTGTAATGCTTCGTGGGTTGGACTGGAAACCGGCGATGCTGATGGTGGGGGTGCAGGTTGCATATGCTGCGGTGAATGTGCTCTACAAGCTCGCCATTAACGATGGAATGAGCGTCAAAGTTGCCACTGCCTACCGTCTCGCTTTTGGCTCTGCTTTCACCATTCCTCTTGCTCTCTTCTCTGAAAGGAACAACCGACCAAAGCTCACTTGGAGAGTGCTTTTCATGGCATTTCTTTGCGGCTTGTTTGGGGGAAGTTTGTTTCAAAACCTTTTCTATGGCGCCTTGGCTTTAACATCAGCAACGTTTGTATCCGCTATCTACAACCTCATTCCGGTTATCACCTTTATCATGGCAATCACCTTCGGTTTCGAAAGATTAAATTTGAAGGCAGCAGCTGGAAAGGCTAAGGTGTTGGGAACTCTGACTGGAATCGGTGGGGCAATGTTGTTGACCTTTTTCAAAGGGGTGCGAATTGATATCTGGCCCTTCCACATAAACCTTTTGCATCCACATCATGATCAAAATAGCCANGTGGCACCACTACAGGGTGACTCTGGTGGTAGCAATTTGTTGGGTGTTCTATGTGCCATTGCAAGCTGCTTCTCTTATGCTACGTGGTTCATAATTCAGGCTAAGATGAGCAAAGAATACCCAAGCCATTACTCGAGCACGGCTTTGATGTCTACAATGGGAGCAATACAAGCCACTGTTTTTGGTCTTTGTGTTGAAAGGGATTGGAACCAATGGATGCTTGGTTGGAATATCAAGCTACTAGCTGTGGCTTACTCGGGAGTCGTGACCTCTGGATTGGTGATTATTGTCGTTTCGTGGTGCATAAAGNTGAGGGGGCCTCTATTTGCCTCTGTTTTCAACCCTCTAATGCTCGTGGTTGTGGCTGTTGCCGCTTCTTTGATGTTGGATGAGAACTTATATTTGGGAAGTTTGCTTGGAGCAGTGCTGATTGTGTGTGGCCTGTACATGGTTCTATGGGGTAAGAGTAAAGAGATGAAAAAGATTGCTCAGTTGGTGCCATCAGAAATCACCAAAGAAGCCGAAGCTGTAGAAGTTGTTGTTGTAGATCATGATAAATGTGATGACCAAAACAATCACAGCATTGGCAAATTAGATCATGACGATTTGTCAAAAAATGGAGAAGCTAACATTCACGGAGCAGGCTAG

Protein Sequence

>Glyur000026s00001935.1
FNCTCDAAVDDYVLSTDDDDDEDEEHVQCGAGVEANAIAFAGVNVLYKLAVNDGMNLRVVVAYRFVFATAFIAPLALIVERKTRTKMTWTVLFQSFLCGLFGGTLAQNFYLEALSLTSATYASAMANLIPAITFIMAVSFGLEKLNLRTAAGKAKILGTMIGIGGAMVLTFVKGVEIKMGSSHLNLLHHPNGAHPHTTTGGKXVLGSLCSLASGISYASWLIVQAKMNQRYPAIYSSTALMSFWGSLLSIVLALCFERDWSQWRLGWXIRLLTAAYSGIVVSGVMVVAISWCVHMRGPLFASVFSPLMLVIVALAGSTMLNENLHLGSIIGAVLIICGLYAVLWGKSKEMKKKNQLVPSESPHDQSDTVEIVVRSVDVKDKSIHDNCDVHGNTVQEVRDNTIEDSSVDHGHEVQSARVPNQGKELGGEGEGEISRKVVDGLKPALLMLVVQIALASVNVLYKLAINDGMSVRVVTAYRLIFAAASTIPLALFFERKNRPKLTWRVVFMSFFCGLFGGSLFQNLYFESLALISATFASAAYNLIPAVTFILAVSCGFERLNLQTAAGKAKVLGTITGIGGAMLLTFLKGIEINIWTFHINLLHKKGQTGTLNGDSGSKLLGVFCGLGSCFCFALWLIIQAKMSKEYPNHYSSTALMSLMGAIQATVFALCVDKDWSQWRLGWSIRLLTAAYSGIVASGIVVIVIAWCVRMRGPLYASIFNPLMLVLVAIAGSLMLDENLYLGSVFGAVLIVIGLYMVLWGKSKEERKVTDLEITPEIEEIEVVVASTKVDHHDNINCSNNSHACSKSSHIVNKDHDNNSSKTMKGVRMSVMLRGLDWKPAMLMVGVQVAYAAVNVLYKLAINDGMSVKVATAYRLAFGSAFTIPLALFSERNNRPKLTWRVLFMAFLCGLFGGSLFQNLFYGALALTSATFVSAIYNLIPVITFIMAITFGFERLNLKAAAGKAKVLGTLTGIGGAMLLTFFKGVRIDIWPFHINLLHPHHDQNSXVAPLQGDSGGSNLLGVLCAIASCFSYATWFIIQAKMSKEYPSHYSSTALMSTMGAIQATVFGLCVERDWNQWMLGWNIKLLAVAYSGVVTSGLVIIVVSWCIKXRGPLFASVFNPLMLVVVAVAASLMLDENLYLGSLLGAVLIVCGLYMVLWGKSKEMKKIAQLVPSEITKEAEAVEVVVVDHDKCDDQNNHSIGKLDHDDLSKNGEANIHGAG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	444001	464441	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001935.1	PF00892.15	EamA	39	157	5.90E-14
Glyur000026s00001935.1	PF00892.15	EamA	215	343	2.20E-07
Glyur000026s00001935.1	PF00892.15	EamA	455	583	2.50E-14
Glyur000026s00001935.1	PF00892.15	EamA	629	757	6.50E-09
Glyur000026s00001935.1	PF00892.15	EamA	848	977	7.90E-15
Glyur000026s00001935.1	PF00892.15	EamA	1029	1157	7.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.944
SRR1783600	control	2.949
SRR1783602	moderate drought stress	0.543
SRR1811619	moderate drought stress	0.599

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.870
DRR006520	Root Summer glycyrrhizin high producing strain	4.686
DRR006521	Root Winter glycyrrhizin high producing strain	0.347
DRR006522	Root Winter glycyrrhizin high producing strain	0.331
DRR006523	Root Summer glycyrrhizin low producing strain	3.812
DRR006524	Root Summer glycyrrhizin low producing strain	3.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.243
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.226

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.382
SRR2868004	Drought Stress (root)	2.326
SRR2967015	Control (root)	1.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.407
SRR9715740	Leaf	0.118
SRR9715741	Leaf	0.655
SRR9715739	Root	0.585
SRR9715742	Root	2.379
SRR9715743	Root	1.937

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.518
SRR8749028	MeJA induced 9h	6.762
SRR8749029	MeJA induced 9h	12.890
SRR8749030	Uninduced	74.041
SRR8749031	Uninduced	82.702
SRR8749032	Uninduced	52.741

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.570
SRR8400027	Control - Root	3.217