Gene detail information of Glyur000026s00001933.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26670.1 | 5.00E-107 | Plant haem oxygenase (decyclizing) family protein |
| NR | AFK40999.1 | 3.99E-156 | unknown [Lotus japonicus] |
| COG | YP_007167087.1 | 9.00E-08 | heme oxygenase [Halothece sp. PCC 7418] |
| Swissprot | tr|O48782|HMOX1_ARATH | 3.00E-139 | Heme oxygenase 1, chloroplastic (Precursor) |
| trEMBL | tr|I3SL57|I3SL57_LOTJA | 1.00E-156 | Uncharacterized protein {ECO:0000313|EMBL:AFK40999.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 436828 | 440648 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00510 | HMOX, hmuO, ho | EC:1.14.14.18 | Porphyrin and chlorophyll metabolism | map00860 |
| Mineral absorption | map04978 | |||
| Fluid shear stress and atherosclerosis | map05418 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001933.1 | PF01126.15 | Heme_oxygenase | 109 | 275 | 6.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 97.292 |
| SRR1783600 | control | 97.948 |
| SRR1783602 | moderate drought stress | 86.058 |
| SRR1811619 | moderate drought stress | 85.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 87.562 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 86.629 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 152.028 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 147.574 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 113.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 113.928 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 108.648 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 108.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 127.403 |
| SRR2868004 | Drought Stress (root) | 167.216 |
| SRR2967015 | Control (root) | 195.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 86.692 |
| SRR9715740 | Leaf | 134.751 |
| SRR9715741 | Leaf | 85.093 |
| SRR9715739 | Root | 88.041 |
| SRR9715742 | Root | 85.076 |
| SRR9715743 | Root | 82.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.607 |
| SRR8749028 | MeJA induced 9h | 89.367 |
| SRR8749029 | MeJA induced 9h | 83.447 |
| SRR8749030 | Uninduced | 65.367 |
| SRR8749031 | Uninduced | 56.432 |
| SRR8749032 | Uninduced | 95.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 193.204 |
| SRR8400027 | Control - Root | 180.454 |