Gene detail

Gene detail information of Glyur000026s00001930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62300.1	8.00E-43	WRKY family transcription factor
NR	XP_003549709.1	6.86E-116	PREDICTED: WRKY transcription factor 6-like isoform X1 [Glycine max]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	1.00E-78	WRKY transcription factor 6
trEMBL	tr\|K7MJD8\|K7MJD8_SOYBN	3.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01490.3}

Sequence

Transcript Sequence

>Glyur000026s00001930.1
GGACGTATGAATGCAGGAGAACCAGAAGCTGAAGGAGATGCTCAGCCATGTGAGCAGTAACTACACGAACTTGCAAATGCATCTCGTGTCATTAATGCAACAGCAACAGAACGAACGCATCGAAAGCACAGAACATGAGCTGGTGGTCCAAGGAAAATTAGCTGAGGAGAAAGAGCACGGGGTTGGCGGTGGAACGATGCCTAGAAAGTTGATTGATTTAGGTCCTAATAATGGTACAGCAGAAGTAGATGATCAAGTATCTAATTCTTCTTCGGANGAAAGAACTCGATCAAGCACTCCCCAGAACATTAATAAAACCGATCATCAGAAGGATAAGAAATTAGACTCTGACCCTGATCATCACTCAGAATTACAAGAGTGGGACCCGAGTAAGCTTCAGAAATTGAACCCCTCCAACGCTACGGATCAAGCCACGATGAGAAAAGCCCGTGTCTCAGTCCGTGCCCGATCAGAAGCCCCCATGGTTCAGCGTTGTGCGGAGGACAGAACAATTTTGATAACGACATATGAAGGGACCCATAACCATCCATTGCCACCCGCAGCTATGGCCATGGCATCGACCACAGCAGCTGCTGCCAGCATGTTGCTGTCAGGGTCAATGTCCAGTGCGGATGGGAATATGATGAACCCCAATTTACTAGCCAGAGCTATTTTTCCTTGTTCTTCTGCTAACAACATGGCCGCCACACTCTCAGCATCAGCACCATTCCCTACGGTCACACTGGACCTTACACACAACAACAACAACAACAACAACAACGCATTATTGCAGCACCAAATTAACCCACCTCAAGGCCATGCCCCAGTATTCCAGGTGTTAGGGGGGCAGGCTCAGAACTTTGGGCAATTGGGACAACAATTGCCACAGGTGATTGCGCAAGCACTGTATAATAACCAATCCAAATTCAGTGGCCTTCAGTTGTCGTCTCAGGACTCGTCACTCGGTGCCGCCGCCACNGCAGCCATCACTACGGACCCAAACTTCACGGCTGCACTCGCGGCCGCTATCTCCTCCATCATTGGCGGCGCTGCCCATCCCAACAACAACAACAGTAGTAATCCCAATATCATCAATAGTGCTACAATCAATAGCTTTTCAGGAAACTAATTAAAGCTCTTCTCTATTTTTTCTTTTTTTTTCCATCAATTTTTAATCTTTTTGTTTATTTATTCAAGAAAGTGGGGAAGGGAAAACNGATAAATTTGTGGATGTCCACGTCAAAATAGGTTTTAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	422701	424475	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.813
SRR1783600	control	2.897
SRR1783602	moderate drought stress	4.011
SRR1811619	moderate drought stress	3.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.087
DRR006522	Root Winter glycyrrhizin high producing strain	0.085
DRR006523	Root Summer glycyrrhizin low producing strain	0.919
DRR006524	Root Summer glycyrrhizin low producing strain	0.996
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.952
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.864

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.416
SRR2868004	Drought Stress (root)	44.706
SRR2967015	Control (root)	27.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	89.841
SRR9715740	Leaf	61.056
SRR9715741	Leaf	138.969
SRR9715739	Root	1.531
SRR9715742	Root	3.271
SRR9715743	Root	3.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.040
SRR8749028	MeJA induced 9h	89.780
SRR8749029	MeJA induced 9h	92.717
SRR8749030	Uninduced	124.933
SRR8749031	Uninduced	182.732
SRR8749032	Uninduced	89.887

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.247
SRR8400027	Control - Root	10.778