Gene detail

Gene detail information of Glyur000026s00001929

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G62290.2	Saposin-like aspartyl protease family protein
NR	ACN24614.1	aspartic acid protease [Phaseolus vulgaris]
Swissprot	tr\|O04057\|ASPR_CUCPE	Aspartic proteinase (Precursor)
trEMBL	tr\|F1LKN0\|F1LKN0_PHAVU	Aspartic acid protease {ECO:0000313\|EMBL:ACN24614.1}

Sequence

Transcript Sequence

>Glyur000026s00001929.1
GTGTGAGTGACAGTGTAGTGTGTGTGTGTGTGTGTAGGTATTTAGTATTAGTATTACCTTTAAATTTAAATTGCAGCATCTCTCTCAGGTGCCTTCTACTCTCTTCTCCGAATCTCTCTTCCGTATATTGGAGAACATGGGGAACAAGTTGCATGCGGTTGGGTTGTGTTTGTTTGTGTCAACCCTGTTGCTTTCTGCCGTGTTCTGTGCACCAAGTGATGGACTGCGTAGGATTGGACTGAAAAAGATTAAATTGGACCCAAACAACAGGCTTGCTGCACGAGTTGGATCCAAAGATGCTGCTGAGTCTTTCCGAGCTTCCATTAGAAAATATCATCTCCAAAACAACCTGGTTGACACTGAGGAAACCGATATTGTTGCATTGAAGAATTACTTGGATGCTCAGTACTACGGTGAAATAGCCATTGGAACCTCTCCTCAGAAGTTCACTGTCATTTTTGACACGGGCAGCTCTAATTTGTGGGTGCCATCATCTAAGTGTACCTTCTCGGTTGCATGCTACTTCCATGCCAAGTATAAGTCCAGCAAATCAAATACTTACAGGAAAAATGGAACTGCTGCTGCTATACAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCTATGACAATGTCAAAGTTGGTGACATAGTTGTTAAGAACCAGGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGTGGCCAAGTTTGATGGTATACTGGGACTTGGATTTCAAGAGATATCAGTTGGAAATGCTGTTCCAGAACCAGTATTTTCATTTTGGCTCAACCGGAATCCAGAGGAAGAAGAAGGGGGTGAAATTGTTTTTGGTGGTGTTGATCCTGCTCACTACAAGGGAAAGCACACTTATGTGCCTGTGACAAGAAAAGGATATTGGCAGTTTGATATGGGAGATGTACTTATTGATGGTAAATCCACCGGATACTGTGCTGATGGCTGTTCAGCCATTGCAGACTCAGGGACATCATTGTTGGCAGGTCCAACGACTGTGATTACCATGATAAACCATGCAATTGGAGCATCTGGAGTTGTAAGTAAAGAATGCAAGGCCATTGTTGCGGAGTATGGACAAACAATCATGGACTTGCTTTTGGCTGAAGCACAGCCAAAGAAGATCTGTTCCCAAATTGGATTGTGCACTTTTGATGGGACTCGTGGTGTTAATGTGGGTATTGAGAGTGTAGTGGATGAGAATGAAAGAAAATCNTTCGGTGGTCTTCATGATGCTACTTGTTCTGCTTGTGAGATGGCGGTTGTTTGGATGCAGAACCAGCTGAGCCAGAATCAGACACAAGATCAGATACTAAGCTATATCAATCATCTTTGTGATAAAATGCCTAGCCCAATGGGAGAATCGTCTGTTGACTGTGATATCTCTTCGTTGCCCATAGTTGCCCTGACAATTGGTGGAAGAACCTTTGACCTTGGCCCAGAGGAGTACATACTCAAGGTGGGTGAAGGTCCTGCGGCTCAGTGCATTAGTGGCTTTACTGCTATAGATATTCCTCCTCCACGTGGCCCTATCTGGATCCTTGGAGATGTCTTCATGGGCCGCTATCACACAGTCTTTGATTTTGGTAAATTGAGAGTCGGATTTGCTGAAGCAGCCTAGAGGATGCTCTCGTGTCTCTCGGAATATATTGACCACCCTTAATCGGCATAACCTTGCAATCATAATTTACCTAAAGTTTATGTTTGTATATATTAATTAANACCTTGGGTGTCTCTCCCCATGGATGGACAAAATAGCTTCATCCCTAGACTATGTATGCAGTTTAAGTCGAAGGGTGTATCTTGTTTTGCAAGATGCATGCACGGTGTTAATATATTGTGATGGCTTGTGGTAATATTGTGATGTGATGCATTGGTAGTTTTTTAAGTGATAATTTACTACTTTNTTTAATTTTCTGGCATCGTCCGAACTATTGTAATGCTATCCTCCCATGTCTTCCACACCCGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	411062	417094	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006629 lipid metabolic process

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001929.1	PF00026.18	Asp	90	501	9.50E-116
Glyur000026s00001929.1	PF03489.12	SapB_2	311	345	2.00E-12
Glyur000026s00001929.1	PF05184.10	SapB_1	375	412	2.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.161
SRR1783600	control	15.236
SRR1783602	moderate drought stress	21.258
SRR1811619	moderate drought stress	20.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.441
DRR006520	Root Summer glycyrrhizin high producing strain	55.610
DRR006521	Root Winter glycyrrhizin high producing strain	196.950
DRR006522	Root Winter glycyrrhizin high producing strain	190.667
DRR006523	Root Summer glycyrrhizin low producing strain	139.909
DRR006524	Root Summer glycyrrhizin low producing strain	138.665
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.629
SRR2868004	Drought Stress (root)	50.391
SRR2967015	Control (root)	46.794

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.996
SRR9715740	Leaf	24.154
SRR9715741	Leaf	30.209
SRR9715739	Root	21.730
SRR9715742	Root	46.621
SRR9715743	Root	39.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.012
SRR8749028	MeJA induced 9h	18.344
SRR8749029	MeJA induced 9h	22.900
SRR8749030	Uninduced	7.086
SRR8749031	Uninduced	2.667
SRR8749032	Uninduced	10.196

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.196
SRR8400027	Control - Root	45.520