Gene detail

Gene detail information of Glyur000026s00001927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62280.1	1.00E-91	SLAC1 homologue 1
NR	XP_003610460.1	0	hypothetical protein MTR_4g132400 [Medicago truncatula]
COG	YP_007244965.1	1.00E-14	tellurite resistance protein-like permease [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q5E930\|SLAH1_ARATH	6.00E-123	S-type anion channel SLAH1
trEMBL	tr\|G7JJA0\|G7JJA0_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43892.1}

Sequence

Transcript Sequence

>Glyur000026s00001927.1
ATGGGTGACTGCACTGAGATCAAGCCATCAATTGAGGTAGTAGTCGTAAGTGCTTCCACTAAAAACAACCATCCCCACCCCCCAACCGATAATAACATCACCACCATTACCAAGAAGCCATCATCATCATCATCATCCCAGTTACCAATCATATCCAAACTCCATGGAGGCTACTTTTTCATGTGCCTTTCCCTTGGTGCACAAGCCTTGCTGTGGAAGAGTTTGAGCGAACACAACAAGGAATCACAAACCCTGTGGCATGGATTCAACTTGATGCCTTCCGTTGCCTATTTACTACTTTGGTGTCTTGCAGTACTCTCTGCAACTACCCTGTCTTTTCTCTATATGCTCAAGTGCATCTTGCACTTTGATGCTGTGAAGAAGGAGTTCTCACATCACATTGGAGTGAACTACATGTATGCCCCTTGGATTTCATGGCTCCTCATGCTTCAATCAGCACCCTTGAATATTGTTCCCAGAGAAAGTCACTACTTCCAGTTTCTCTGCTTGGCCTTGTCATTTGTGATATTCCTGCTTGACATAAAACTGTATGGGCAATGGTTCACAACTGAGAAGAGGTTTCTGTCAGTCGTGGCAAACCCTGTGAGCCTGGTGTCAGTTATAGGGAACTTGGTGGCTGCTCAGGTCATGGCAGAAACTGGTTGGAAAGAGAGTGCGGTTTCAATGTTCTCAGTAGGAATTGGACACTATTTGATTCTGTTTGTAACTCTGTATCAGCGTCTGACAAGTAGCAACCAGTTTCCTATAGTGTTAAGGCCAGCTTATTTCTTGTTTTTTGCTGCACCAAGCATGGCAAGTCTTGCTTGGAAATCCATCACAGGGGCTTTTCTCATCTCATCAAAGATGATGTTCTTTCTGTCTTTGTTCCTTTTTATCTCTCAGGCTTGCAGGCCAGGCCTGTTCAAGAAATCTATGAGAAGGTTAAATGTTACATGGTGGGTGTACTCATTCCCTTTAACCTTTCTTGGTCTGGCTTGTGGGGAATATGCTCAAGAGGTGAAGGGTGGCATGGCCTCTGGGTTAATGCTGGTGATGTGTATTGTCTCTGTGCTGGTTTTCATTTTCTTGATGCTAATCTCTGTACTCAAAATTGAGAGGATGCTGCTGCAGAAAAATGCTCCGAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	405948	407194	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006873 cellular ion homeostasis

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008308 voltage-gated anion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001927.1	PF03595.12	SLAC1	54	365	3.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.857
SRR1783600	control	5.008
SRR1783602	moderate drought stress	7.245
SRR1811619	moderate drought stress	7.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.827
DRR006520	Root Summer glycyrrhizin high producing strain	8.075
DRR006521	Root Winter glycyrrhizin high producing strain	3.240
DRR006522	Root Winter glycyrrhizin high producing strain	2.916
DRR006523	Root Summer glycyrrhizin low producing strain	5.659
DRR006524	Root Summer glycyrrhizin low producing strain	5.325
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.949
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.062

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.319
SRR2868004	Drought Stress (root)	84.804
SRR2967015	Control (root)	131.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.553
SRR9715740	Leaf	1.385
SRR9715741	Leaf	1.382
SRR9715739	Root	1.264
SRR9715742	Root	5.833
SRR9715743	Root	6.737

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.478
SRR8749028	MeJA induced 9h	1.597
SRR8749029	MeJA induced 9h	1.263
SRR8749030	Uninduced	2.533
SRR8749031	Uninduced	1.050
SRR8749032	Uninduced	0.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.989
SRR8400027	Control - Root	5.903