Gene detail information of Glyur000026s00001925 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22030.1 | 3.00E-79 | F-box family protein with a domain of unknown function (DUF295) |
| NR | KHN03492.1 | 0 | Putative F-box protein [Glycine soja] |
| Swissprot | tr|O65451|FB333_ARATH | 1.00E-127 | Probable F-box protein At4g22030 |
| trEMBL | tr|I1MR40|I1MR40_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 401222 | 402502 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001925.1 | PF14476.1 | Chloroplast_duf | 86 | 402 | 3.30E-151 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.029 |
| SRR1783600 | control | 0.029 |
| SRR1783602 | moderate drought stress | 0.030 |
| SRR1811619 | moderate drought stress | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.085 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.431 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.385 |
| SRR2868004 | Drought Stress (root) | 6.598 |
| SRR2967015 | Control (root) | 1.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.897 |
| SRR9715740 | Leaf | 1.344 |
| SRR9715741 | Leaf | 3.789 |
| SRR9715739 | Root | 0.116 |
| SRR9715742 | Root | 0.682 |
| SRR9715743 | Root | 0.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.117 |
| SRR8749028 | MeJA induced 9h | 0.277 |
| SRR8749029 | MeJA induced 9h | 0.535 |
| SRR8749030 | Uninduced | 89.538 |
| SRR8749031 | Uninduced | 14.212 |
| SRR8749032 | Uninduced | 1.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.522 |
| SRR8400027 | Control - Root | 2.229 |