Gene detail information of Glyur000026s00001916 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22010.1 | 0 | SKU5 similar 4 |
| NR | XP_003549771.1 | 0 | PREDICTED: L-ascorbate oxidase homolog [Glycine max] |
| COG | YP_005329244.1 | 2.00E-14 | Multicopper oxidase, type 3 [Blastococcus saxobsidens DD2] |
| Swissprot | tr|Q00624|ASOL_BRANA | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|I1MR46|I1MR46_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 364434 | 368726 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001916.1 | PF07732.10 | Cu-oxidase_3 | 34 | 148 | 2.50E-36 |
| Glyur000026s00001916.1 | PF00394.17 | Cu-oxidase | 161 | 297 | 1.20E-39 |
| Glyur000026s00001916.1 | PF07731.9 | Cu-oxidase_2 | 397 | 501 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.928 |
| SRR1783600 | control | 9.943 |
| SRR1783602 | moderate drought stress | 4.809 |
| SRR1811619 | moderate drought stress | 4.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.502 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.381 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.252 |
| SRR2868004 | Drought Stress (root) | 16.909 |
| SRR2967015 | Control (root) | 19.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.759 |
| SRR9715740 | Leaf | 0.074 |
| SRR9715741 | Leaf | 0.700 |
| SRR9715739 | Root | 3.959 |
| SRR9715742 | Root | 2.804 |
| SRR9715743 | Root | 2.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.208 |
| SRR8749028 | MeJA induced 9h | 0.079 |
| SRR8749029 | MeJA induced 9h | 0.067 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.701 |
| SRR8400027 | Control - Root | 12.487 |