Gene detail

Gene detail information of Glyur000026s00001915

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11800.1	4.00E-136	endonuclease/exonuclease/phosphatase family protein
NR	XP_003549775.1	0	PREDICTED: tyrosyl-DNA phosphodiesterase 2-like isoformX1 [Glycine max]
COG	YP_007058509.1	1.00E-10	poly(A) polymerase [Rivularia sp. PCC 7116]
trEMBL	tr\|I1MR47\|I1MR47_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01590.1}

Sequence

Transcript Sequence

>Glyur000026s00001915.1
ATGAGACGAATAGTTGCGCTCCTTTCTTCATCGTATTCGTCCAGTCGTAGTCTCTTAAACCCTAAAAAATCCCAAATTGCAGGCTCTCTCCACAACAATATTCGATCTCCAATGTCTTGGGCCTGCAAGAATTGCACCTTCCTCAATCCTCCCTCTCAAAAATCCGAATGCCAAATCTGCTTGTCTTCCCCTCCCTCTCCCCTTCCCCCTCCTTCCGCTTCAGCTTCTTCTTCTTCTTCTTCGTCTTCCCCAAAATGGTCGTGCAAGGCCTGCACTCTCTTCAACTCTTACAAAAACTCCACTTGCCACCTCTGCGGCACACGTTCCCCCGTTCTCTCCCTTTCCAACTTGCACGATTTAAATGACACCGACCACGATTCTTCTGTGGGCTCCGTTTTCTTCCCTCTTCGACCTTGCAAGAGGAAAGCCATCGTCGATGACGACCCTTCTGCTCAACCACCATACGCTGCCAAGCTGAATCTTACCGAGAACAANGATTCGGGAAATGATTTTGGTTCATTGAAGATTCTAAGTTACAATGTTTGGTTCCGTGAAGACTTGGAGTTGCACAAGAGGATGAAAGCTATTGGCGACCTTGTTCAGTTGCATTCCCCTGATTTTATCTGTTTCCAGGAGGTTACTCCGAATATATATGACATTTTCAAGCAATTCACCTGGTGGAATGTGTATCATTGTTCAGTTTCTTCTGAGATGGCCTATTCAAGACCGTACTTTTGTATGCTGGGGATTCTTCAGAAAGTAGGACCAAACTTGTTCCATGCTAAATTAAGCAAACTACCGGTGAAATCATTCCGCAGCAAATCCTTTAGCAACTCTATAATGGGAAGAGAACTTTGCATTGCTGAGGTGGAAGCTGCGAGTGGCAAGTCATTGGTTGTGGCCACTAGCCATCTTGAGAGTCCCTCTCCGGCCCCTCCGAAATGGGANCAGATGTACAGCAAGGAACGAGTAGAGCAGGCCAAAGAGGCTCTGAACCTTCTCAAGAAGCACCCTAATGTTGTTTTTGGAGGTGACATGAACTGGGATGACAAACTGGATGGCCAATATCCTCTACGAGATGGGTGGATTGATGCTTGGTCTGTTCTGAGGCCAAATGAAGTTGGTTGGACATATGATACCAAGTCAAACCAGATGTTGANGGGCAATCGTACTCTCCAGAAACGATTGGATCGTTTCGTTTGCCNTTTCCATGATCTGAAGATAAGCAGTATTGACATGGTTGGGATGGATGCAATACCTGGTGTGTTGTACAACAAAGAGAAGAAAGCAAGAAAAGAGATAAAACAACTGGTACTCCCTGTTTTGCCCAGTGATCATTATGGCCTGCTTTTGACAATTTCCAGTAAGTAATGCACCTCTGGAGAATCTGACTGGTGAAACCATTATTCTCACCCTGTGCTGTTGCTGTATCTAAGGCATACGTTGCATGCAGTTTTGTATAGACCACCGGAAAAATGTGAAGGGGAGGTTGTCNACATTGTACATGGGGACAGATTGCTACTGTTTTCAAAACTTTTATCTGCCGTCTTGTCTAATTAATATTTCTCTTTTCATTCCATTTTCAAAGTATTGCATTTGCTTTGCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	358165	360343	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001915.1	PF03372.18	Exo_endo_phos	177	446	1.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.967
SRR1783600	control	18.038
SRR1783602	moderate drought stress	15.003
SRR1811619	moderate drought stress	14.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.984
DRR006520	Root Summer glycyrrhizin high producing strain	15.486
DRR006521	Root Winter glycyrrhizin high producing strain	8.225
DRR006522	Root Winter glycyrrhizin high producing strain	7.996
DRR006523	Root Summer glycyrrhizin low producing strain	13.558
DRR006524	Root Summer glycyrrhizin low producing strain	13.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.454
SRR2868004	Drought Stress (root)	9.427
SRR2967015	Control (root)	10.625

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.874
SRR9715740	Leaf	2.425
SRR9715741	Leaf	1.770
SRR9715739	Root	10.661
SRR9715742	Root	9.372
SRR9715743	Root	11.596

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.472
SRR8749028	MeJA induced 9h	10.169
SRR8749029	MeJA induced 9h	7.631
SRR8749030	Uninduced	2.408
SRR8749031	Uninduced	1.187
SRR8749032	Uninduced	1.940

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.674
SRR8400027	Control - Root	11.901