Gene detail

Gene detail information of Glyur000026s00001913.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21990.1	0	APS reductase 3
NR	XP_003529636.1	0	PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic-like [Glycine max]
COG	YP_007109372.1	4.00E-102	phosphoadenylylsulfate reductase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|P92980\|APR3_ARATH	0	5'-adenylylsulfate reductase 3, chloroplastic (Precursor)
trEMBL	tr\|I1KNE4\|I1KNE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G39130.1}

Sequence

Transcript Sequence

>Glyur000026s00001913.1
CGTCCGAGTGGTGTGGTGGTGAATGGAAGAGGTGAAAGAAAGAACGCGATCTGACGGAAGGCATGAGGCACACAGGATTCGTATCATCCAGTGGAAATATGCCACGTAAGCACGCCGAAACTCCGTCCAGGTGCAACGAACCTGAAAGACCGCCCCGACTTACCGTTTCTCATCGTCCTCTTGTATAAGTAGCAGCGCTTTCTCTCTATCTTAAAAAATTCTGAGAGCACAATTCATTTCATTTCACAACAAAATTACTCACACCCTTTACATTAACATTCTTAATTAATGGCCCTCGCTGTTACTTCTTCAATCGCGGTATCAAGCTCAAGCTTTCATCAATCCTCAGACCCCAAACTCCCGCAAATTGGTTCGATTAGGGTTTTGGGGAGGCCGTATGGAGTAGATGTTAATTTATCTCAAAGACGGAGCTTGGTAAAGTCCGTCAACGNTAACGGTGAACGTCAACGCAGGGATTCCCTCGTTCCTGTCGCAGCAACTACCATTGCTTCTGAGGTTACTGAAACCCAAGAGGAAGATTTTGAACGGTTAGCTGTTGACCTTGAGAATGCTTCACCTCTTGAAATTATGGATAGAGCCCTCCAGAAATTCGGCAACGACATCGCTATTGCCTTCAGTGGTGCTGAAGATGTTGCTTTGATTGAGTATGCACACTTGACGGGTCGACCCTTTAGGGTGTTCAGTCTGGACACTGGGAGACTGAANCCCGAAACTTATCAATTTTTCGATGCGATTGAGAAGCATTATGGAATCCGCATTGAATACATGTTCCCTGATGCGGTTGAGGTTCAGGCATTGGTTAGAAGTAAGGGTCTTTTCTCGTTCTATGAGGATGGCCATCAAGAGTGCTGCCGGGTGAGGAAGGTGAGACCCTTGAGGAGGGCACTTAAGGGCCTCAGGGCATGGATAACTGGGCAGAGGAAAGATCAGTCNCCTGGTACTAGGTCCNAAGTACCCGTTGTTCAGGTTGATCCGGTTTTTGAGGGAATCNATGGTGGGATTGGCAGCTTGGTGAAATGGAACCCGGTTGCGAATGTGAAAAGCCATGATATATGGAACTTCCTTGGCACCATGAATGTGCCTGTGAATTCCTTGCATTCACGGGGATACATTTCCATTGGGTGTGAGCCGTGCACAAGGGCTGTTTTACCGGGACAACATGAGAGGGAAGGGAGGTGGTGGTGGGAGGATGCCAAAGCTAAGGAGTGTGGTCTTCACAAAGGAAATATAAAGCAGGGGGATTCTGCTCAGCTTAACGGAAATGGAGTTGCCCATGCAAGTGGCACCGCCACTGTTGCTGACATTTTCAATACCCAGAATGTGGTCAGCTTGAGTAGGACTGGAGTTGAGAATTTGACAAAATTGGAAAACCGAAAAGAACCATGGCTTGTTGTTCTTTATGCACCGTGGTGCCCCTATTGCCAGGCTGTGGAGGAATCTTATGTTGATTTGGCAGAGAAGTTGGCGGGGTCAGGGGTGAAGGTTGGAAAATTTAGAGCGGATGGAGANCAGAAAGAATTTGCAAAGCGTGAACTGGAGTTGGGAAGCTTCCCCACGATAATATTTTTCCCAAAGCATTCGTCTCGGCCAATAAAGTATCCCTCCGAAAAGAGAGATGTTGATTCCTTGACGGCATTTGTAAATGCGTTACGATGAATAGTTCTTATTGTTTGGGTTCATTACAGCACGGGTATATAATTCATCTCACNGATTCTGGTAACTCATTGGAAGTTTAAGTTGAAGTTTTGACTCTAGTTTTGGAAGAAGAAAAAAAGATCCTCAGCTTTAACCTGTGGCGTCTTTGAATAGTTTTAGATATTCATCTTACTGTGATTATTGTTAGTAGTCATTTTGTAGGGGAGTGATTGATTTCCTGCTTTTGTAGATGAGTGATTTTTAATTAGATAATGTTGTGACCTTTTCCAATATGAATGAAAATCGTGATATCTTAGATTTAATAGCTTCTATTGTTCATTTTTTTCCCCTTCAAATTTAACTTGCTCTTTTTGTCTTTAATGTGGGAACTTGTCTCGAGCATCCAATGTCACCTCTTTTGGCTCTGCCCACTAACACTTGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	343068	347825	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05907	APR	EC:1.8.4.9	Sulfur metabolism	map00920

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0019419 sulfate reduction

GO:0045454 cell redox homeostasis

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001913.1	PF01507.14	PAPS_reduct	112	292	5.60E-42
Glyur000026s00001913.1	PF00085.15	Thioredoxin	365	459	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.662
SRR1783600	control	2.632
SRR1783602	moderate drought stress	3.413
SRR1811619	moderate drought stress	3.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.631
DRR006520	Root Summer glycyrrhizin high producing strain	60.953
DRR006521	Root Winter glycyrrhizin high producing strain	3.732
DRR006522	Root Winter glycyrrhizin high producing strain	3.575
DRR006523	Root Summer glycyrrhizin low producing strain	32.710
DRR006524	Root Summer glycyrrhizin low producing strain	31.785
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.431

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.930
SRR2868004	Drought Stress (root)	62.101
SRR2967015	Control (root)	26.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	101.339
SRR9715740	Leaf	216.412
SRR9715741	Leaf	140.586
SRR9715739	Root	14.344
SRR9715742	Root	17.551
SRR9715743	Root	17.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.219
SRR8749028	MeJA induced 9h	16.658
SRR8749029	MeJA induced 9h	12.739
SRR8749030	Uninduced	22.261
SRR8749031	Uninduced	12.272
SRR8749032	Uninduced	10.692

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.546
SRR8400027	Control - Root	32.339