Gene detail

Gene detail information of Glyur000026s00001909

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11790.1	5.00E-118	arogenate dehydratase 1
NR	XP_003549790.1	0	PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max]
COG	YP_004172970.1	1.00E-71	prephenate dehydratase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9SA96\|AROD1_ARATH	2.00E-153	Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (Precursor)
trEMBL	tr\|I1MR49\|I1MR49_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01610.1}

Sequence

Transcript Sequence

>Glyur000026s00001909.1
ATGACATATTCACATAAAGAGAATTGTGCACATAAATGGGAATGTTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTCCTGTTGAAGATGAGAAGCCAAGTGCTGCACCCTTGGTTCAATCTCCTGGGGCTGCTGCATCTGACGGGCTTTCCGAGAATGACTCAAAGGGCTTTCACAAGGATCTTAACCTGCTTCCCAAGCCATTAACGGCAATTGATCTTTCTTCTTCTGGAAGTGATGGATCAAAGGTGCGTGTGGCTTATCAGGGACTTCCAGGAGCATATAGTGAGGATGCAGCTTTGAAAGCNTATCCAAAATGTGAGACTGTGCCGTGTGATGAGTTTGAAGCTGCATTTAAGGCAGTTGAATTGTGGTTAGTGGATAAAGCGGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCATCCACCGTAATTATGACTTACTTCTTCGACACAGACTGCACATTGTTGGGGAGGTGCAGTTGCGTGTTAACCATTGCCTCTTAGGATTGCCTGGCGTGAGCAAAGAGGAGCTCAAAAGTGTTGTGAGTCATCCTCAGGCTCTTGCTCAATGTGAGATGGTGCTTCATGATTTAGGTGTTGTCAAAATTGGTGCACATGATACTGCTGCTGCTGCTCAGACGGTGGCCTTAAATCGTGAAAGAGACACTGGAGCTATTGCNAGTTCCCGAGCTGCAAAAATATATGGCCTCAACATTCTTGCAGAAAGAATTCAGGATGATGATGAAAACATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTNCAGGAACTGACAGACCCCATAAGACTAGCATTGTTTTCAGTCTTGAAGAAGGTCCCGGTGTACTATTCAAAGCCTTGGCAGTGTACTTTGACTACCTCTTCTACATTGATTTTGAAGCTTCTATGGCAGAGCCTCGTGCACAATATGCTTTAGGACAGTTGCAGGAATTTGCGAGATTTCTTCGAATTCTTGGTTGTTATCCTATGGATACAGTTGTATAGAAAGTTCAATGTCTTAAGTGCTGTTCATTTTACTGAAANCTTAAGCAGCTACCTACTGGAGTCAAAGGGAGAAAAGTACCCTTTTAAAAGCATTGCTCCTTTCACCTGTTTCGAAATTCTTTTGAGCTCCTAAGGAGTTTCGTGATAGTTTTAACTGCAGGGTGGTGAATACTNGTACTGTACAGGCATCGTCATTTTGTTATTATCTTTCAACTGCAGTTGGGATAGCGTCATTAAAAAGATCAATGTTTGTTACCTTTAACTGCAAACTCCAGGACATTTGGCTCCATACATTTCCTTTCATTTAGANTGTAGATCCCTTTATGCCAAAGGAATTGCAATGTCAACTTAGTCATTAGTCACCAAAGTATACAAATTAATGGCTCCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	325276	332368	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05359	ADT, PDT	EC:4.2.1.91 4.2.1.51	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process
GO:0009094 L-phenylalanine biosynthetic process

molecular_function
GO:0004664 prephenate dehydratase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001909.1	PF00800.13	PDT	87	263	1.00E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.665
SRR1783600	control	4.693
SRR1783602	moderate drought stress	2.988
SRR1811619	moderate drought stress	3.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.108
DRR006520	Root Summer glycyrrhizin high producing strain	3.076
DRR006521	Root Winter glycyrrhizin high producing strain	0.436
DRR006522	Root Winter glycyrrhizin high producing strain	0.336
DRR006523	Root Summer glycyrrhizin low producing strain	1.631
DRR006524	Root Summer glycyrrhizin low producing strain	1.573
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.119

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.114
SRR2868004	Drought Stress (root)	13.910
SRR2967015	Control (root)	12.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.843
SRR9715740	Leaf	1.041
SRR9715741	Leaf	2.074
SRR9715739	Root	2.795
SRR9715742	Root	2.861
SRR9715743	Root	2.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.333
SRR8749028	MeJA induced 9h	15.455
SRR8749029	MeJA induced 9h	15.569
SRR8749030	Uninduced	68.843
SRR8749031	Uninduced	128.747
SRR8749032	Uninduced	50.334

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.726
SRR8400027	Control - Root	15.380