Gene detail

Gene detail information of Glyur000026s00001908

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G62050.1	Ankyrin repeat family protein
NR	XP_006584449.1	PREDICTED: ankyrin repeat domain-containing protein 13C-B [Glycine max]
trEMBL	tr\|I1KND7\|I1KND7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G39110.1}

Sequence

Transcript Sequence

>Glyur000026s00001908.1
CACCGTTTTTATTTTATTTTATTTTATTCTATTCTACTCTTTTTTTTTACAAAAAAAGTCGTGCCTCCCTCTCTTTCTCCGTGATTCGTCACTTCCACAATNCCATTCCATCCAATCAATCCCAATGTTCCATTCTATCATCAGACCAAAATACCCTTCCTCTCCCTCTCCCTCTCCCTCTCCTTAGTTACTTCATCCCTTCCAATTATTCCCATTCCACAAATTAAACCGCCGAGTGTGGAGTAGTGTGGTGGTGGTGGTAACTGATAACTGTTGGGGGGATGGCGAAGAGCACCACTCCTCCGTCGACGATAAAACCGGAACACTATGCCCACAGCCCCATACACTACGCCGTCGCATTAGGGGATCACNCCACTCTTTCTAGAATCATCTCCACGCTGCCCCGTTTCCCTGACCCGTCTCTAATCCGAACTNAGTCCGATTCCATCGCCCAGGAACGCCTCGCCGACCAGATCTCCGCCGTCCTCGACCGCCGCGACGTCCCTTTCAGGGAAACCCCNCTCCATCTCGCCGTCCGCCTCAACGACCTATTCGCCGCCCGCTCCCTCGCCACTGCCGGCGCCGACGTCTCCCTCCAGAACTCCGCCGGCTGGAACGCACTCCAGGAAGCCCTGTGCCGCCGCGCTTCCGACATCGCACTCGTCCTCCTCCGCCTCCACCACCGCAACGCCTGGTCCAAGTGGCGCCGCCGCCTCCCACGCGTCATCGCCGCGCTACGCCGCATGAGGGACTTCTACATGGAGATCTCCTTCCACTTCGAGAGCTCCGTCATCCCCTTCGTCGGAAGGATCGCTCCCTCCGACACNTACAGAATCTGGAAGCGAGACGGCAACCTCCGCGCCGACACCTCCCTGGCCGGCTTCGACGGCCTCAAGATCCAGCGCGCCGATCAGAGCTTCCTCTTCCTCGGCGACGGCGACCGGTCACACGACGTGCCACCGGGCTCCTTGCTCGTCCTCAACCGCGATGACCGGAAAATCTTCGACGCATTCGAGAACGCCGGCGGACCGATGAGCGAGTCTGACGTCGCCGGATTCTGCTCTCAGACGAGCGTTTACCGTCCCGGCATGGACGTNACGAAGGCGGAGCTGGTGGGAAGAACGAATTGGAGGAGACAGGAGAAGACGGAGAGCGTGGGAGAGTGGAAGGCAAAGGTTTACGAGGTGCAGAACGTGGTTTTTAGTTTCCGGTCACGGAAAGTCGCCGGTGGAGAGTGTGACGTGGCGGGGAGCGAGCAGGTACTGCCTCTTGAATTGGACGAGGACGATGACGGTTTTCTGGTGGCGGAGAATCCGTTTCCAATGCCAGAGAAGAGAAGACACAGCAGCTTCGTTCGGGAAGAGAGGGAGTGGGTCCCATTGGGGAGAAAGAGCGTGGACCTAACAACCTCGATGGCGGCCCCACCGCCGCCGAGAAGGCCATCGGCGAGTGTGGTGAGCGTGAGCATGCCGCAGACAAAGGAGAAAGAGTATGTNAGAAGCTTGCGACCTTCGGTTTGGCTAACGGAGCAGTTTCCGTTAAAGACGGAGGAGCTTCTGCCGTTACTGGACATACTGGCCAACAAGGTCAAGGCGGTTAGGAGGCTCAGGGAGTTGCTCACCACCAAGTTCCCGCCCGGTACTTTCCCGGTAAAGGTGGCAATACCGGTGGTCCCCACAGTGAGGGTGGTGATTACATTTACCAAGTTCGTGGAGCTGCAGCCGGTGGAGCAATTCTACACTCCCTTCTCCAGTCCAAGGCATTTGGTCACNGACACAGGAACAGGAGATGAGCAACACAAACCAGAAAGCCGCTCCTCCTCATCGTCTTCTGTAGCATCCACGTGGCTGAGACGAAATAACAGCAGTAAGCAGCAGCGATGTTCTTCCATGGCATTGGATTCGGACCCTTTTGTCATTCCTGCTGGGTATACATGGACCAGTGTGGATGATGATAAGTCACGCAAAATGAAGAAATCCAGGTCGTTGAGAAAGTCCTCAAGCAAACGAATGGACAGGCATGAATGAATGAATGAATAGGGATGGTGTCTTATTAGTTTGTTATGTTAATTAGGTGCTTTTAACGTCGATGGAGTTGCGAGCGTCCACAATGTAGATATCCCGTCCAATTCTTTTAATCAAACTGGGGCGTGCGTGGGGGAATTGGTGTTTCATAGAGTGAGTGATTTGCGGCCAAATACCAAATGGTATCACTGAAAGCACACTAATTAGAGGCTAGAGCTACATTTCTTAATTTGCTTATACTTTTTGTTTCATCTGTCTTAAACTATATAGATTCTTTTCTTTCAATTCCGTCAAATTCTGCGTTCCCTGCTTGGGGAAGGAACTAGGATACAGTTACGGTTATTGCCAGTTGCCACCCTACTTGTGCTATATCAGTGCATTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	316891	319790	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001908.1	PF12796.2	Ank_2	71	131	3.80E-06
Glyur000026s00001908.1	PF11904.3	GPCR_chapero_1	193	552	1.90E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.229
SRR1783600	control	2.253
SRR1783602	moderate drought stress	2.252
SRR1811619	moderate drought stress	2.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.676
DRR006520	Root Summer glycyrrhizin high producing strain	2.757
DRR006521	Root Winter glycyrrhizin high producing strain	1.900
DRR006522	Root Winter glycyrrhizin high producing strain	1.804
DRR006523	Root Summer glycyrrhizin low producing strain	4.371
DRR006524	Root Summer glycyrrhizin low producing strain	4.310
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.856
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.842

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.025
SRR2868004	Drought Stress (root)	11.804
SRR2967015	Control (root)	13.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.750
SRR9715740	Leaf	1.786
SRR9715741	Leaf	2.277
SRR9715739	Root	4.493
SRR9715742	Root	3.174
SRR9715743	Root	4.078

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.559
SRR8749028	MeJA induced 9h	1.226
SRR8749029	MeJA induced 9h	1.461
SRR8749030	Uninduced	5.724
SRR8749031	Uninduced	2.853
SRR8749032	Uninduced	4.472

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.652
SRR8400027	Control - Root	10.200