Gene detail

Gene detail information of Glyur000026s00001905.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05170.2	6.00E-162	Galactosyltransferase family protein
NR	XP_004507687.1	0	PREDICTED: probable beta-1,3-galactosyltransferase 2-like [Cicer arietinum]
Swissprot	tr\|A8MRC7\|B3GT2_ARATH	0	Probable beta-1,3-galactosyltransferase 2
trEMBL	tr\|V7CAK0\|V7CAK0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25946.1}

Sequence

Transcript Sequence

>Glyur000026s00001905.2
TGAAAATTTGTTGAACGAAACATTTAGCAGATTTTAAGGGGAAACCGAAAACTGAAGGTAGATAAGAGGATCTAGGAACCGTGATCGAACACTTGAGTAACTGTTACCGTTATTTGTTATAAATATTCTTTCAATTCCAAATTCCCTTTGTGACATGAAGAGGGACGGTTCCTTAACCTTAACATTGGAAGATTAGGAGGGTTCTACTAGTGGGTCTTCCTCTCTTGCCCCAAACCAACGAGTGAGGGGAGGAAGAAGAGGAGAAGGACAATAATGTCTATGAAGAGCAAAGGAGGGGCTGTAGAACAGTGTGCAAGGAGTGTCCTACATAGGAAATGGGCTCTTCTGCTTTGTTTGGCAAGCTTCTGTGCTGGAATGTTCTTCACCAATAGGATGTGGTCGATGTCTGAATATAAAGAAATTTCAAGGACTTCTAGAGAGATTGAACAAATAAAATTAAACTCTGATGGTTGTAATCTAAATCTAGTTGTAAAGCCTAACTCCAATTACAGTCAAGTGAAAGTTTCAAATACACAGAATCTCCTGCCTGAATGTATGCTGANTGGTTCTCCTGTATCAGGAAACTCAGAGACAGTTGAATCAANTCCAAGGAAAAAATATTTCATGGTTATAGGGATCAATACAGCTTTTAGTAGCAGAAAAAGAAGAGATTCTGTTCGTGCAACTTGGATGCCACAAGCTGAGGAAAGAAAAAAGTTGGAGGAAGAAAAGGGCATAATCATACGTTTTGTTATAGGTCACAGTTCTACATCTGGTGGCATTCTCGACAAGGCTATCGAAGCAGAGGAGAAGCTTCATGCTGACTTTTTGAGGCTGAACCATGTTGAGGGCTACCTGGAACTATCAGCTAAAACAAAAACCTACTTTTCAACTGCTGTTGCCTTGTGGGATGCAGAATTTTATGTCAAAGTTGATGATGATGTTCATGTGAATTTAGCAACACTTGGATTGACTCTGTCTATGCACCGTCAGAAACCCCGGGTGTACATCGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAGAAGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGCGAGGTGGGAAACAAGTACTTTCGTCATGCCACGGGACAATTATATGCCATTTCGCAAGATTTGGTGACTTATATCTCAATAAATCAGGATATGCTGCATAAATATGCTAATGAAGATGTTTCATTGGGATCCTGGTTNATTGGTTTAGATGTGGATCATGTTGATGATAGGAGAATGTGTTGTGGTACACCCCCTGATTGCGAGTGGAAGGCTCAGGCTGGTAATATCTGTGTTGCTTCATTTGATTGGAAATGCAGTGGGATTTGTAGGTCTGTTGAGAGGATGAAGGAAGTTCACCAGCGTTGTGGGGAGGATGAAAATGCATTGTGGAGTGCAACTTTCTGATAGGGTGCAACAAGTTGCAACTCATCTTCTACTAAACAAGTACAATATTCAGAAACCTGAAAGAGACGCATGCCATGCTGCTATATATATAAGTAGTATGAGACTTAGAAGATGGTTCAACTCAATGTGAAGGAAGAGTACAGTAGTAGCAACAAACCCCCCATTCTTTTGTTAAGTGGCTCTGCCATGTCTAACGTTTCGTAATAATCACTTCTCTTTTTATGTCAAGCTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	297959	302433	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0008378 galactosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001905.2	PF13334.1	DUF4094	20	89	8.80E-15
Glyur000026s00001905.2	PF01762.16	Galactosyl_T	130	327	3.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.616
SRR1783600	control	17.580
SRR1783602	moderate drought stress	8.927
SRR1811619	moderate drought stress	11.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.784
DRR006520	Root Summer glycyrrhizin high producing strain	13.292
DRR006521	Root Winter glycyrrhizin high producing strain	7.422
DRR006522	Root Winter glycyrrhizin high producing strain	7.494
DRR006523	Root Summer glycyrrhizin low producing strain	8.806
DRR006524	Root Summer glycyrrhizin low producing strain	6.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.818

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.312
SRR2868004	Drought Stress (root)	7.890
SRR2967015	Control (root)	7.629

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.596
SRR9715740	Leaf	2.358
SRR9715741	Leaf	2.763
SRR9715739	Root	2.038
SRR9715742	Root	5.985
SRR9715743	Root	5.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.520
SRR8749028	MeJA induced 9h	3.081
SRR8749029	MeJA induced 9h	2.405
SRR8749030	Uninduced	1.509
SRR8749031	Uninduced	0.740
SRR8749032	Uninduced	1.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.450
SRR8400027	Control - Root	27.054