Gene detail information of Glyur000026s00001904 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G04630.1 | 9.00E-26 | Protein of unknown function, DUF584 |
| NR | XP_003550488.1 | 8.28E-50 | PREDICTED: uncharacterized protein LOC100810697 isoform X1 [Glycine max] |
| trEMBL | tr|K7MJF0|K7MJF0_SOYBN | 3.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01680.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 291830 | 297462 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001904.1 | PF04520.8 | Senescence_reg | 146 | 283 | 6.30E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.696 |
| SRR1783600 | control | 2.643 |
| SRR1783602 | moderate drought stress | 1.002 |
| SRR1811619 | moderate drought stress | 0.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.227 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.766 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.609 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.323 |
| SRR2868004 | Drought Stress (root) | 10.100 |
| SRR2967015 | Control (root) | 4.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.870 |
| SRR9715740 | Leaf | 0.431 |
| SRR9715741 | Leaf | 0.267 |
| SRR9715739 | Root | 1.309 |
| SRR9715742 | Root | 2.989 |
| SRR9715743 | Root | 3.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.002 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.143 |
| SRR8400027 | Control - Root | 2.177 |