Gene detail

Gene detail information of Glyur000026s00001901.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11720.1	0	starch synthase 3
NR	XP_003546152.1	0	PREDICTED: soluble starch synthase 3, chloroplastic/amyloplastic-like isoform X1 [Glycine max]
COG	YP_008595.1	3.00E-92	glycogen synthase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q43846\|SSY3_SOLTU	0	Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|I1MFH5\|I1MFH5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G11500.1}

Sequence

Transcript Sequence

>Glyur000026s00001901.2
ATGGAAGAAGGTGCTTTGTGGCGACGTGAATTCAAGGCAGGTTGGGGTTCTCTTTGTATCAACGCTGGTGCAGATTTTTCGCGTAGGAGACGAAAGAAGGCATCAACTGCAAGGCCCAAGGGCCATGGTCACAAGGGTTTCGTCCCAAGACCAGCTTTCGGAACAGGCAACCAGAAGAGGGATAAAAAAAGCACTCGAGTCAAGGGAGATTCGTTTACCCCAACAGTTGCTGAGACTTCAGGGGGTAANAAAAAGACACTTGATGTCAAGATTGATGCTGACCAAGAGGGGGAAGTTGAAATTTCCCTGGACAAAAAATTTGAGGTAGTGGATGCTAATGATGAAACTCTTGTTGGGGCTGGTCAATTATCATTGGTACACGAGACACTGGGTGTTTCTCAAAGCATTCGAGTTGGGGAAAATGGAAACATTTCTATAATTGACGAGGAGGGTGTTCTGGACACTTCCAACATCAGTGGTATTGGGAATGCTAAAGATTCAGAGGAAAGACCATTAGACTATGCAAAAATTAATGAAATCGTTAAGGAGATAAATGCTGACAATGATGATAAAGAAACTGAGGGAACCACTGTTAGGGAAACAAATACTGATGCCAATGATAAAATAAANGAGGAAGCTTCTCGGCTGTTGAAGTTAGAGTTGGAAGCAAATCTACGCAAGCAAGAAATAGAGAGGACTGCAGAGGAAAACTTTTCACTAGGGAACAAGCTGTTTGTATATCCTCCTGTAGTTAAACCCGATCAAGATATTGAAGTATTTCTTAATAGGAGTCTTTCAACTCTAAGTAATGAGCCAAACGTTCAGATTATGGGGGCATTTAATGATTGGAGGTGGAAATCTTTTACCATTAAGTTAAATAAAACAAATTTCAATGGTGANTGGTGGTCTTGCCAGGTACATGTTCCAAGAGAAGCCTATAAAGTAGACTTTGTGTTCTTCAATGGGCAAAATGTCTATGACAATAATGACAAAAAGGATTTTTCCATACCTGTTGACGGTGGAATGGATGCATTTGCATTTGAAGATTTCTTGCTTGAGGAAAAACGTAAAGAATTAGAAAAACTTGCCAAGGAGCAAGCTGAAAGGAAAAGACAGGAAGAAGAGAGAAGGCGGATGGAAGCAGAGCAAGCTGCACAAGAAGAGGACAGGTCACTGGCTAGGATGGAAATTCAAAGAAGGAGAGAAGAATTGCAGCAATTGATGAAAAAAGCGGTAAAATCCATTGACAATGTTTGGTACATAGAACCTAGTGAATTTAAAGGCAAAGACTTGGTCAGATTATATTATAACAGAAGCTCAGGTCCTCTTCCACATGCTAAGGAAGTATGGATTCATGGGGGCCGCGATAATTGGAAGGANGGATTATCAATTGTTCAAAGGCTCGTTAAATCTGGTTCAAAAGATGGTGATTGGTGGCAAGTTGATGTTGTTGTACCCGACCAAGCTTTTGTCCTGGATTGGGTCTTTGCTGATGGTCCACCTCACAATGCAATTGTGTATGACAACAACCATAATCAGGACTTCCATGCTATTGTCACAAAGGCTATTGATGAAGAGTATTGGGTTAGGGAAGAGCAGCTGATATACAGAAAACTCCAGGAGGAGAGGAGGTTAAGAGAGGAAGCNATACGTGCCAAGGCTGAAAAAATAGCACGTATGAAAGCTGAAACAAAGGAAAGAACTTTGAAAAGATTTTTACTTTCTCAAAAGCATATTGTCTTCACTGAGCCTCTTGATGTTCAAGCAGGGAGCACAGTGACAGTATCTTATAACCCCCACAACACAAATCTGAATGGAAAACCGGAGGTTTGGTTTAGATGTTCATTTAATCGTTGGACTCATCATAATGGTCCATTGCCACCTCAGAGAATGTTGCCTGCAGAGAATGGTACTCATGTCAAAGCCTCTGTTAANGTTCCACTGGATGCATACATGATGGACTTCGTGTTCTCTGAGAGGGAAGATGGTGGAGTTTTTGACAATAAATATGAAATGGATTATCACATACCTGTTTTTGGAGGTATTGTAAAGGAACCACCTATGCATATAATCCATATTGCTGTTGAGATGGCCCCGATTGCTAAGGTTGGAGGCCTTGGTGATGTTGTTACTAGTCTTTCCCGAGCTGTTCAGGATTTAAACCACAATGTGGACATTGTTCTTCCAAAGTATGACTGTTTGAAATTTAGCAATGTAAAAGATTTTCAATATCACAAAAGCTATTTCTGGGGTGGGATTGAAATAAAAGTATGGCATGGAAAGGTAGAAGGTCTCTCTGTCTTCTTTTTGGAGCCTCAAAATGGGCTGGCTGTGTATATGGTTGTGGGAATGATGCAGAGAGATTTGCTTTTTTCTGATATCATCCACTGCCATGATTGGTCAAGTGCACCAGTTGCATGGCTATTTAAAGAACATTATGCACATTACGGTCCAAGCAAAGCACGGGTTGTTTTTACAATTCATAACCTTGAATTTGGAGTCCACTTCATTGAAAAAGCTATGGCACACTCAGACAAGGCTACAACTGTCTCTCACACTTATTCTAAGGAGGTTGCTGGGCATCCTGCGGTTGCTCCTCATCTGCGCAAATTCCATGGTATAATAAATGGAATTGACCCAGATATATGGGACCCATATAATGATAAATTCATTCCTGTATCGTACACATCAGAAAATGTTGTTGAAGGCAAAAGAGCTGCCAAGGAAGCCTTGCAACAAAGGCTTGGTTTGAAAAGAGCTGATATTCCTTTATTGGGAATTATNTCTCGATTGACTCATCAGAAAGGAATCCATCTAATCAAGCATGCTATATGGCGTACCCTAGAGCGTGATGGACAGGTTGTGTTGCTTGGTTCAGCTCCAGATCACCGTATCCAAAATGATTTTGTGAATATGGCCAATCAATTGCATTCTCTTCATAATGACCGTGCTAGATTCTGTCTTGCATATGATGAGCCCCTATCACACTTGATATATGCCGGTGCTGATTTCATTCTAATTCCTTCAATCTTTGAGCCATGTGGTCTTACTCAACTCGTAGCAATGAGATATGGTTCAATACCTGTTGTTCGAAAAACTGGAGGACTTTATGATACTGTATTTGACGTTGATAATGATAGGGATAGAGCACAGGCACAGGGTCTTGAGCCAAATGGGTTTAGTTTTGATGGAGCTGATACTGGAGGCGTTGATTATGCACTGGATAGGGCAATAGCGGCATGGTATGAGGGCCGTGATCGGTTTAACACTTTATGCAAGACGGTAATGGAGCAAGACTGGTCTTGGAACTGGCCTGCTCTTGACTATCTGGAGCTTTACCATGCTGCACGCAAGTCAGCATGAGATTTCACTAGACAGGAAGCCAGGTGCCAAGGCCCATATTAAGTTTCATCCCCCAATGTACAGAGTTTCCTTATTGATTATGAAGAAATTGAATAACGTGGTAGAAATGAAAATTTTGACTGCCATGGCTCGGACCCTTCAATTGCCGTTCATCTGGAAGATCGAGCTATCCTCGTCAATCCCCAAGTAAAAAAGCATTATGGAAACCAGGAAACAAACATCGGAGCATTTTCCCAAGTTGAGATGAATTTTCATGCAGAGAGCNATGCGTAATAAATAAGCATTATGGTAGTTTATAGCAAATATTGCACCTTGGAATAACTAGTGTGAAGTTTAACAATAATCACTAGCCAGAGTTTTGATGTTTCTCNTCCTTAACTGGGCAGTTCAACATTGACCACTTTTGGAATTGGTTATTTTGGTTGAATCAGCCAACAGGAAAATTGCCATTGCTGAACATCAATTTCACCACATCGTGATGTACTTGAGACCATAAGTTGTCACTTATAAGTTGACAAATGGTTACAAGCACTTGAAACCATGCAAGCCCCCTCCCTTGAGGTTCATCAACAGATAGCAGAAGTGAATGTTCGGCAATGTAACTAAATATTTCTGAGTAAAGCATCTNCTACATTTTCCACAAAATGGCAGTGCTTTATTTTTTTGA

Protein Sequence

>Glyur000026s00001901.2
MEEGALWRREFKAGWGSLCINAGADFSRRRRKKASTARPKGHGHKGFVPRPAFGTGNQKRDKKSTRVKGDSFTPTVAETSGGXKKTLDVKIDADQEGEVEISLDKKFEVVDANDETLVGAGQLSLVHETLGVSQSIRVGENGNISIIDEEGVLDTSNISGIGNAKDSEERPLDYAKINEIVKEINADNDDKETEGTTVRETNTDANDKIXEEASRLLKLELEANLRKQEIERTAEENFSLGNKLFVYPPVVKPDQDIEVFLNRSLSTLSNEPNVQIMGAFNDWRWKSFTIKLNKTNFNGXWWSCQVHVPREAYKVDFVFFNGQNVYDNNDKKDFSIPVDGGMDAFAFEDFLLEEKRKELEKLAKEQAERKRQEEERRRMEAEQAAQEEDRSLARMEIQRRREELQQLMKKAVKSIDNVWYIEPSEFKGKDLVRLYYNRSSGPLPHAKEVWIHGGRDNWKXGLSIVQRLVKSGSKDGDWWQVDVVVPDQAFVLDWVFADGPPHNAIVYDNNHNQDFHAIVTKAIDEEYWVREEQLIYRKLQEERRLREEAIRAKAEKIARMKAETKERTLKRFLLSQKHIVFTEPLDVQAGSTVTVSYNPHNTNLNGKPEVWFRCSFNRWTHHNGPLPPQRMLPAENGTHVKASVXVPLDAYMMDFVFSEREDGGVFDNKYEMDYHIPVFGGIVKEPPMHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIVLPKYDCLKFSNVKDFQYHKSYFWGGIEIKVWHGKVEGLSVFFLEPQNGLAVYMVVGMMQRDLLFSDIIHCHDWSSAPVAWLFKEHYAHYGPSKARVVFTIHNLEFGVHFIEKAMAHSDKATTVSHTYSKEVAGHPAVAPHLRKFHGIINGIDPDIWDPYNDKFIPVSYTSENVVEGKRAAKEALQQRLGLKRADIPLLGIXSRLTHQKGIHLIKHAIWRTLERDGQVVLLGSAPDHRIQNDFVNMANQLHSLHNDRARFCLAYDEPLSHLIYAGADFILIPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDNDRDRAQAQGLEPNGFSFDGADTGGVDYALDRAIAAWYEGRDRFNTLCKTVMEQDWSWNWPALDYLELYHAARKSA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	265981	280452	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM53,CBM53,CBM53,GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function

GO:0009011 starch synthase activity

GO:2001070 starch binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001901.2	PF03423.8	CBM_25	254	338	1.20E-27
Glyur000026s00001901.2	PF03423.8	CBM_25	430	519	7.30E-28
Glyur000026s00001901.2	PF03423.8	CBM_25	590	678	3.10E-25
Glyur000026s00001901.2	PF08323.6	Glyco_transf_5	689	861	1.30E-32
Glyur000026s00001901.2	PF00534.15	Glycos_transf_1	923	1043	4.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.566
SRR1783600	control	50.563
SRR1783602	moderate drought stress	33.894
SRR1811619	moderate drought stress	33.675

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.561
DRR006520	Root Summer glycyrrhizin high producing strain	43.956
DRR006521	Root Winter glycyrrhizin high producing strain	6.777
DRR006522	Root Winter glycyrrhizin high producing strain	6.371
DRR006523	Root Summer glycyrrhizin low producing strain	29.774
DRR006524	Root Summer glycyrrhizin low producing strain	29.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.257
SRR2868004	Drought Stress (root)	9.571
SRR2967015	Control (root)	5.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.155
SRR9715740	Leaf	5.477
SRR9715741	Leaf	8.505
SRR9715739	Root	3.193
SRR9715742	Root	22.465
SRR9715743	Root	17.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.463
SRR8749028	MeJA induced 9h	0.454
SRR8749029	MeJA induced 9h	0.379
SRR8749030	Uninduced	2.569
SRR8749031	Uninduced	0.730
SRR8749032	Uninduced	0.595

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.581
SRR8400027	Control - Root	48.425