Gene detail

Gene detail information of Glyur000026s00001894

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04720.1	0	calcium-dependent protein kinase 21
NR	XP_007153943.1	0	hypothetical protein PHAVU_003G078400g [Phaseolus vulgaris]
COG	YP_642814.1	4.00E-26	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q9ZSA2\|CDPKL_ARATH	0	Calcium-dependent protein kinase 21
trEMBL	tr\|V7C6Y3\|V7C6Y3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25937.1}

Sequence

Transcript Sequence

>Glyur000026s00001894.1
ATGGGTTGTCATGGTAGCAAGGAGAAGAAAACACGGACAGAGTTTCGTGGGCATGGTCATGGATCAGGCACAGGTGGAGGTGCTAGTTACCAGTACCACACTATTAACTCACCTACATCTCAGGTTCAGACATCATCCGCACCACCCAAACCAGAGTCACAGTCACAGTCACAGTCACAGGGTCCAACTCCAACAGTGACCCAACCAAACCCAAAACCTCAAAATGTGACGGGGGTGCAGAAAGGAGAAACAACCATATTGGGGAAACCCTTTGAGGACATAAAGAAGCACTACACTCTGGGGAAAGAGTTGGGTAGAGGGCAATTTGGGATTACCTATTTNTGCACTGAGAATTCAAGTGGCCACACCTATGCCTGTAAGTCCATCCTGAAGAGGAAGCTCGTGTCAAAAGCTGACAGAGAAGACATCAAGAGAGAGATTCAGATCATGCAGCATTTGTCAGGGCAACCCAACATTGTGGAATTCAAGGGTGCTTATGAGGACAGGTACTCGGTTCACCTTGTCATGGAGCTTTGTGCTGGTGGGGAGCTCTTTGATCGAATCATTGCTCAGGGTCACTATTCCGAGAGGGCTGCTGCATCGCTTTGCAGAGCTATTGTTAATGTTGTGCACATTTGTCATTTCATGGGTGTATTGCATCGTGATCTGAAGCCTGAGAATTTCTTGCTCTCTAGCAAGGATGAAGGTGCAGCTCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTTTACCGTGATATGGTGGGCAGTGCTTACTATGTTGCTCCTGAGGTACTGCGTCGTAGTTACGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTCCTGAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAACGCCATACTGGAAGGTGAAATTGACTTTGTAAGTGAACCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGACACAGGATCCAAAAAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCATCTGATAAACCGATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAACTTGCATTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAGGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACCATNACCTATGAAGAACTAAAGACAGGCTTGGCTCAAATCGGATCACGACTGTCTGAGCCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCTATAGACTATCTTGAATTCATCTCAGCTACAATGCATAGGCACAGACTTGAACGGGATGAGCATCTCTACAAAGCATTCCAGTATTTTGATAAGGACAATAGTGGGTATATAACTAGAGATGAATTGGAGACTGCCATGACACAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGTAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGCGGAATGCCACACCAGGGACAGCTACTTTCTACTTAATGGAGTCAATTTTACAAGTTCATGCGATTCATCACGGCCGCCAATTAGTTTAGAGACATAACGTTGTTGCCAAGTACCGTCATCTCCCGGAATATGCAAGACACTTCATGGATTGGTGATTTCTTTGAAGCTCTCTGCAATCCCAATTATTGTGCTAAAAATGGATTGCTTGAAGTATTGTGATGCACTTCTGTGTACATTTAGTTTCCGGCTGTCACATTTTATGAGTGTCCTGAGCCTGAGTTTTTATGTTAAAATGCTAACTATGATATCATACTAGAGTTATCATTTTAATNGCAGTTGAGGAATAAATAAATCAGGGGAGGGAAGTCATTTCCTTAAACCCTCTATGTGGAAGTGCAAACCTAAATCTTTCGTTCACATAATGTATTGATAATCTTTTGTGCATGTGTTACATTTCCTTCTTTCATTTTCCTCCTCTTCCTCTTCCTATTGACAAGGGCTTTCGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	234895	240067	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001894.1	PF00069.20	Pkinase	98	356	3.50E-68
Glyur000026s00001894.1	PF13499.1	EF-hand_7	404	463	1.00E-10
Glyur000026s00001894.1	PF13499.1	EF-hand_7	476	535	4.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.523
SRR1783600	control	66.548
SRR1783602	moderate drought stress	35.435
SRR1811619	moderate drought stress	35.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.904
DRR006520	Root Summer glycyrrhizin high producing strain	76.579
DRR006521	Root Winter glycyrrhizin high producing strain	39.798
DRR006522	Root Winter glycyrrhizin high producing strain	38.420
DRR006523	Root Summer glycyrrhizin low producing strain	35.901
DRR006524	Root Summer glycyrrhizin low producing strain	36.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.982
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.753
SRR2868004	Drought Stress (root)	54.609
SRR2967015	Control (root)	53.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.676
SRR9715740	Leaf	11.045
SRR9715741	Leaf	9.055
SRR9715739	Root	9.899
SRR9715742	Root	24.887
SRR9715743	Root	23.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.350
SRR8749028	MeJA induced 9h	53.013
SRR8749029	MeJA induced 9h	50.097
SRR8749030	Uninduced	5.232
SRR8749031	Uninduced	2.679
SRR8749032	Uninduced	7.599

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.415
SRR8400027	Control - Root	88.968