Gene detail

Gene detail information of Glyur000026s00001884

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21820.1	2.00E-94	binding;calmodulin binding
NR	XP_003610414.1	0	Abnormal spindle-like microcephaly-associated protein-like protein [Medicago truncatula]
trEMBL	tr\|G7JI24\|G7JI24_MEDTR	0	Abnormal spindle-like microcephaly-associated-like protein, putative {ECO:0000313\|EMBL:AES92611.2}

Sequence

Transcript Sequence

>Glyur000026s00001884.1
ATGCTCTTTGATGTCTCACTTGATATTGGTAGTGGTATGATGGAGTTTGGGTATATTATTCTACAGGTACTTCAAATGAGTGAGCTACTTCAATATAATGGTGCTTGCAATGATAGAAGTGTGGTGATATTGTTGGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAGTGTGGATCACTTAAATTTTCATAAGTTCTTGGGTTATGACTGCCAAATTACGAATCATAGGCATTTAAGGTTGATNCAGTGCCTTTCAAGTGTTGAATCATTACAAAAGCCAGATACCTTGGATGTGCATGACAATGAAGATGCTGCAAGAAAATTCAAGGCCATCCAGGCTTGGTGGCAAAATATGGCTGAACGAAACTGTATCATGAAACCAGCTGTCCCTAATATGCAGACGTCCAACACCACTGAATGCAGCACCAACATTAGAAGGGAAAATGCTGCAAGAACAATACAATCACATGTCAGAGGACTGGTTGTACGACGCAAGTTTCTAAAGATGGTAAATGCTGTTACCCTTTTGCAGACTGTTTTCAGAGCTTGGCTGAAAGTGCGGCAGGAGTCAGTCTGCAGGATATTTACTACCGTTCAAGTCTATGATTTTTCATGTGAAATATTGAGGCCATCAGAAACATATGAGAGATATGCCATGCTTTTCTATCATAGGCATTCTTTTTTGAGGTTGAAGAGGTCAGCACAGCTTATGCAGCAGGCAGTGAGGAGTTGGCTCTATCNGAGGCATCAAAAAGGAAGTAGAACAAGTCCNGATCTCAAGATTTCAAATATGGTGACTGCTGCCTCTACTGTTCAGAAATTTGTTCGTGGTTGGATAGCACGATCTAGATATACCCAAAAGAAACTTATATTTGATCTTCAAACAAATGCAGCCGTTAGCATTCAGCTAGCTTGGAAAAACTTCATGTGCTGCAAGTGTACTAGGAAGCAACACTATTCTGCATCTAAAATTCAATCTATTGTCCTTCAATCTTTTTTACGTGGATGGATTGCACGGAAGGAAGCTCATGCACGTAGGAACCACATTGTTGAGATTCAAAGGCATTGTCGTGGCTGGCTCGTGAAGCAGAACTTCTTNTTCCAAAGAGATGCTGTGGTAAAGATCCAATGTGTCATTCGAAGCCNAAAATGCCAGAAGGTTCTTGATTGTCAGAAAGATGCTGCATTGGAGATTCAGNGCTTTATCCGGGGGCATTTGACACGAAATCGGCTATTAGGTAGTGCTTCCAAGTTACGTGCAGTNATTCCTATTAGTTGCACTTCAAGACCAGTAGGCTTATCTAGTTTTCAACTGGAAGCATTTATGTTTTCGGTTGTGAAATTGCAACGATGGTGGAAGGGTGTCTTGTTGCTGAAATTAATGATTAAATCGGCCATCATTATCCAGTCTTGCACTCGTCGGTGGATAGCCAGGCGAAAGGCCACTGTTCAGAAACACCATAATGTTNTCATCCAAAAGGCTCTTCATTGCCAGGAAAATGCTGTATTGGAGCTCCAACGCTATNTTCGGGGTCATTTAAGTCGAAATCGGATATTAGGCAGTGCTTCTAAGCTACGTGCAGTTGTTCCTGCTGGTTGCGTTTCAAGACCAGTTGGCTGTTGTAGTTTTCAACTGGAACTGTTCTTGTTTTCAGTGGTCAAATTGCAACGTTGGTGGAAGTTTCGCTTGTTACATAAATTGATGACAAAGTTTGCAATTATTATTCAGTCTCACACACGTGGGTGGATGGCCAGACGAAAGGCCATTGTTCATAGACATCATATTATTGTCATACAGTCCCACTGGANAGGTTATCTTGAACGTAAAGAGTCAACAAAGCAGCTAAGGGAGTTGCGCTTGAGGGTGCAAGAGTCTGCCAGAAATGTGGATGACAGCAAGCGTATCATAAACAGACTCTTGGCAGCTCTTTCAGAGCTACTTAATATGAAGAGTCTTAGTGATATCCTTCATACTTGTTCAACTTTGGATATGGCCACAGGACATTCTCAGAGATGTTGTGAAGAACTTGTGGCTGCTGGTGCTATTGACACCTTGCTGCAGCTTATTCGATCAGTCAGCCGGAGTATCCCTGATCAGGAGGTTCTAAAGCATGCTTTATCAACTCTCCGAAATCTTGCTTGCTATCCTCATCTACTAGAAGTGCTGATCCAAAGCCACGGTTCTGTACAGATAATCATCATGGAGTTAATGAGGAATAAGGAGGATGGTTACTTCATTGCTTCTGAACTTTTNAAGAAGATATGTTCAACTCACAAAGGCGTTGAGGCCATACTCAAATCGCCTGCCCTACTAAAACGACTGCACAGTCTTGTTGAGGAGCTTACTAGGAAGTCAGCATACCTGAAAAGGAATGTTAAGGGAGCTACTCCAGTTGTTAGAGAAAATACAGATAGGCGAATGAGGGAGGCTGCTGAGATTCTGAAGCTGATAGCACGCTCCTGAAGTTTTTCCCTTTTTACAATCGTTGAAATATGCAAGCAATCAAGCGTTCCGATTTTTTGCATTCTTCCCTCATCTCGTGGATTTAGGAGGGAACTTTGAATCTTTTTAGTGATCGTGAGGTTTAAACCTTTGTATAATCTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	189313	195771	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007051 spindle organization

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001884.1	PF00612.22	IQ	149	167	0.0024
Glyur000026s00001884.1	PF00612.22	IQ	268	285	0.0041
Glyur000026s00001884.1	PF00612.22	IQ	328	342	0.016
Glyur000026s00001884.1	PF00612.22	IQ	350	366	0.015
Glyur000026s00001884.1	PF00612.22	IQ	394	412	0.094
Glyur000026s00001884.1	PF00612.22	IQ	464	481	0.011
Glyur000026s00001884.1	PF00612.22	IQ	570	588	0.00034
Glyur000026s00001884.1	PF00612.22	IQ	596	611	0.1
Glyur000026s00001884.1	PF00514.18	Arm	671	714	1.70E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.836
SRR1783600	control	0.855
SRR1783602	moderate drought stress	0.979
SRR1811619	moderate drought stress	0.926

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.724
DRR006520	Root Summer glycyrrhizin high producing strain	2.819
DRR006521	Root Winter glycyrrhizin high producing strain	0.865
DRR006522	Root Winter glycyrrhizin high producing strain	0.832
DRR006523	Root Summer glycyrrhizin low producing strain	0.207
DRR006524	Root Summer glycyrrhizin low producing strain	0.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.411
SRR2868004	Drought Stress (root)	6.281
SRR2967015	Control (root)	5.180

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.299
SRR9715740	Leaf	1.352
SRR9715741	Leaf	2.553
SRR9715739	Root	0.590
SRR9715742	Root	1.808
SRR9715743	Root	1.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.931
SRR8749028	MeJA induced 9h	5.277
SRR8749029	MeJA induced 9h	1.979
SRR8749030	Uninduced	5.932
SRR8749031	Uninduced	1.355
SRR8749032	Uninduced	0.976

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.736
SRR8400027	Control - Root	6.060