Gene detail information of Glyur000026s00001880 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21790.1 | 7.00E-92 | tobamovirus multiplication 1 |
| NR | XP_004507700.1 | 4.54E-157 | PREDICTED: uncharacterized protein LOC101503437 [Cicer arietinum] |
| Swissprot | tr|Q402F4|TOM1_TOBAC | 3.00E-141 | Tobamovirus multiplication protein 1 |
| trEMBL | tr|I1MR67|I1MR67_SOYBN | 1.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00026 | 154424 | 158078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000026s00001880.1 | PF06454.6 | DUF1084 | 9 | 91 | 3.20E-35 |
| Glyur000026s00001880.1 | PF06454.6 | DUF1084 | 99 | 259 | 3.80E-80 |
| Glyur000026s00001880.2 | PF06454.6 | DUF1084 | 9 | 89 | 4.90E-35 |
| Glyur000026s00001880.2 | PF06454.6 | DUF1084 | 89 | 248 | 8.90E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.435 |
| SRR1783600 | control | 12.034 |
| SRR1783602 | moderate drought stress | 16.522 |
| SRR1811619 | moderate drought stress | 16.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.624 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.268 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.685 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.949 |
| SRR2868004 | Drought Stress (root) | 8.926 |
| SRR2967015 | Control (root) | 10.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.219 |
| SRR9715740 | Leaf | 18.788 |
| SRR9715741 | Leaf | 11.698 |
| SRR9715739 | Root | 3.623 |
| SRR9715742 | Root | 4.009 |
| SRR9715743 | Root | 3.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.593 |
| SRR8749028 | MeJA induced 9h | 6.593 |
| SRR8749029 | MeJA induced 9h | 3.646 |
| SRR8749030 | Uninduced | 1.739 |
| SRR8749031 | Uninduced | 0.790 |
| SRR8749032 | Uninduced | 1.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.449 |
| SRR8400027 | Control - Root | 20.847 |