Gene detail

Gene detail information of Glyur000026s00001874

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04880.1	4.00E-132	adenosine/AMP deaminase family protein
NR	XP_003610403.1	0	Adenosine deaminase-like protein [Medicago truncatula]
COG	YP_003968879.1	2.00E-32	adenosine deaminase [Ilyobacter polytropus DSM 2926]
trEMBL	tr\|G7JI13\|G7JI13_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK37663.1}

Sequence

Transcript Sequence

>Glyur000026s00001874.1
CTGAGTGAGGAACAGAGTGATAAGAGAGGGGAGATGGAGTGGTGGGTGTCAATGCCAAAGGTAGAACTGCACGCTCACCTCAATGGATCCATTAGAGACTCCACCCTTCTAGAGCTCGCTAAAGCTTTGGGTGACAAGGGTGTCATCGATTTCTCCCAAGTGGAGCATGTTATCCTTAAAAAACTGTTCCTGAAATTCAAAATTTTCAAATCTGCTGCCAACAAGGCCTTAATCCTCTTGCCGTTGATTTATGATCGTTCATTAACTGAGGTATTCAAGCTGTTTGANGTTATCCACGTTGTTACGACTGATCACTCTAGTGTTACAAGAATTACCAAAGAAGTTGTTGAAGATTTTGCATCAGAGAATGTTGTGTATGTGGAATTGAGAACTACTCCAAAGAAAAATGATTCCCAAGGAATGAGCAAACGTTCTTATATTGANGCTGTACTGGAAGGTCTAAGAGCTGTCAGTTCAGTTGATGTGGCTTTCATTCCTTACAGTGAGGAGGAGCTTAGAGATNTTTCAAATCCTATACACTCAGCCACAAATAACAAATGTAATGAAAATACTAGGAAGAAAATCTTTGTTAGGCTTCTCCTAAGCATTGACCGTAGGGAGACAGCAGAAGCAGCAATGGAAACTGTCATGCTTGCGCTGGAAATGAGATGTTTAGGGGTCGTTGGAATTGATCTCTCCGGGAATCCAGCTGTTGGTGAATGGATTACCTTTTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTGTGTAACTCTTCACTGTGGAGAGGTACCTAATTCGAAGGAGATACATGATATGCTTGACTTTCTTCCCCCGAGGATTGGACATGCTTGTTTCTTTGAGGAGGAACACTGGAGAAAGCTGAAGTCTTGTAACATCCCGGTTGAACTTTGTTTGACATCAAACATTAGGACGTTGTCCGTTCCATCAATAGATGCTCATCATTTTGTGGATTTGTATAATGCAAAACATNCTTTAGTCCTGTGTACTGATGACTCGGGTGTGTTCTCTACCAGTCTCTCCAACGAATACAAAATTGCCGCTTCTTCATTCGGCCTTGGAAGGAAGGAGATGTTTGAGCTATCAAAGAATGCTGTTGAGTTTATATTTGCAGATAATGTAGTAAAGGATGATTTAAGAAACAGTTTTAACTTAGCAGCAAAGAATCTGGAACTTTAAGTACAATTTCATTCATCAATGGATTTTTTTTTTTAGGGGGGGGGGGGTGGTGTTTACCGAGTTTTACAATGATGGACACAATTTGTAGCTGTTATGTTAGTAGAGACTAGAGAATGAGTTAACAAGGTTGGCTGGGGCTGGTGCTTCAAAAAAGAATGGAATTGGTCCTTGATTAGAATTGTTTATTACAAAAACAGGAATTCAAGTGATTCTTCTAGGAGCCATGCAGTGAAATTGGAGTTGGTCAAGTCATTAGGTATATGTTGATCAAGTGACTGCTATTAGCCAATTTTATATTTGACCACTAGAGATTATGGGCGGCTATGAACTCGTCCATAACGCGATACAATACAACAAAAAGACTTTTCAAGTAGGCCAAAGCATGCCTGCGGTAATCGAGCGGCAAGCTACCGTGTCTGTTCAGTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	135341	138625	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019239 deaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001874.1	PF00962.17	A_deaminase	18	386	1.50E-36
Glyur000026s00001874.2	PF00962.17	A_deaminase	18	388	1.20E-35
Glyur000026s00001874.3	PF00962.17	A_deaminase	18	380	1.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.856
SRR1783600	control	1.788
SRR1783602	moderate drought stress	2.498
SRR1811619	moderate drought stress	2.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.266
DRR006520	Root Summer glycyrrhizin high producing strain	3.301
DRR006521	Root Winter glycyrrhizin high producing strain	1.586
DRR006522	Root Winter glycyrrhizin high producing strain	1.560
DRR006523	Root Summer glycyrrhizin low producing strain	2.278
DRR006524	Root Summer glycyrrhizin low producing strain	2.461
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.215
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.622
SRR2868004	Drought Stress (root)	9.597
SRR2967015	Control (root)	8.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.065
SRR9715740	Leaf	9.086
SRR9715741	Leaf	5.865
SRR9715739	Root	1.193
SRR9715742	Root	2.829
SRR9715743	Root	2.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.098
SRR8749028	MeJA induced 9h	10.484
SRR8749029	MeJA induced 9h	7.280
SRR8749030	Uninduced	12.753
SRR8749031	Uninduced	2.939
SRR8749032	Uninduced	4.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.825
SRR8400027	Control - Root	10.850