Gene detail

Gene detail information of Glyur000026s00001869

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61810.1	2.00E-94	beta-glucosidase 45
NR	XP_003529622.1	3.57E-176	PREDICTED: beta-glucosidase 46 [Glycine max]
COG	YP_004449345.1	7.00E-55	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|O80689\|BGL45_ARATH	3.00E-113	Beta-glucosidase 45 (Precursor)
trEMBL	tr\|G7JI10\|G7JI10_MEDTR	5.00E-175	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:AES92597.1}

Sequence

Transcript Sequence

>Glyur000026s00001869.1
ATGCGGACCTATGTTTTAAAACATTTGGTGACAAGAGTCAAGTACTGGGTCACCTTCAACGAGCCAAATATCTTAGTGCCACACGGTTACCGTTCTGGTTTATTTCCCCCATGCCGCTGCTCTAGTTCAATATTGGCATTGGTAAAGTGCAGAGAAGGAGATTCAGAAAAGGAGCCCTTTGTAGCANCCCATAACATTATCCTCTCACATGCATCGGCAGTTGATATCTTTAGATCCAAATACCAGGCTGAACAAAGAGGAAGAATTGGCATAGTCCTTCAACATGAATGGTTCTTGGACCCAATCATGTTTGGAAAGTACCCCAAAGAGATGGAGGACGTTCTTGGAAGCCTCTTACCCAAATTTTCCCTCAATGAGAAAGAGAAACTCAAGAAAGGATTGGATTTCATTGGCATCAACTACTACACAGCTAGCTATGTTCAAGATTGCATATACTCCAAGTGTGACACGGGATTTGGGGTCTCCAGAACAGAGGGTTCATACATGAAAAATGGAGAGAAAAATGGTATCCCAATCGGAGAACCTACTTCATTTAGTTGGCTTAATATTTACCCAGAAGGCATGGAGAAAACTGTTACATATGTGAAGGATAGGTACAACAATACTCCAATGTTCATTACTGAAAATGGGTATGCCGAACAAGACGATCCAAATATCAATTTGGAAGAACAACTTAATGATTTTAAGAGAATAAAGTACATGGCAAATCACATAGAGGCCTTGTTAGCAGCAATAAGGAAAGGAGCAGATGTTAGGGGATACTTTGCGTGGTCCTTGGTCGACAACTTTGAGTGGATATATGGATACACGGTTAGNTATGGATTCCACCATGTGGATTATGCCACCCTGAANAGAACTCCAAGACTATCAGCAAGCTGGTACAAGCAATTCATTGCAAAGCATACAGAAACCTCTTTACCGGGAATGTTGATGGATATGGCTAGAAAAGAACGTTTTAAGGGCCACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	109832	111781	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05350	bglB	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001869.1	PF00232.13	Glyco_hydro_1	94	308	6.20E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.546
SRR1783600	control	5.817
SRR1783602	moderate drought stress	4.338
SRR1811619	moderate drought stress	4.359

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.240
DRR006520	Root Summer glycyrrhizin high producing strain	0.234
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.335
DRR006524	Root Summer glycyrrhizin low producing strain	0.333
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.187

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.701
SRR2868004	Drought Stress (root)	2.906
SRR2967015	Control (root)	3.334

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.425
SRR9715740	Leaf	0.198
SRR9715741	Leaf	0.641
SRR9715739	Root	0.331
SRR9715742	Root	3.004
SRR9715743	Root	1.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.072
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.691
SRR8400027	Control - Root	7.259