Gene detail

Gene detail information of Glyur000026s00001864

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19210.2	5.00E-168	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003528676.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Glycine max]
COG	YP_004644999.1	8.00E-48	DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q3E9C3\|RH58_ARATH	0	DEAD-box ATP-dependent RNA helicase 58, chloroplastic (Precursor)
trEMBL	tr\|K7L3V8\|K7L3V8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G38811.1}

Sequence

Transcript Sequence

>Glyur000026s00001864.1
ATTTACCAATTCCCGAGTATTATCATCTTCATCTCTCTGTCTATACAGTGATACAACATACATACATGGACACTCGCACCCTCTCCGTGTCGCCTCTTCTTCCTCTGCGTGTTCTTTCGTCTGAAAAGCCAACTTCTACTTGTTACATTCCTCGTTCACATAACCATATTCTCAGACTCTTGTCCTCCACCAACAACAACATTAACCGCGTCTTCAAGTTCACAGCTCCACAAGCCATTGTGAACCCTTCTCCCGTGACCCCTACTGCAGATGATACAGTTACCACTCCCACCCTCAGAGAATTATGTCAAGCTCGTGTTCCCGACCATGTTGGATATGTCATGCCTACAGATATCCAGAGGCAAGCATTGCCTTATCTTTTTTCCGGGCGTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACTTGCTTTTGATCTATTCCATCATCAACGCTAGAAAATCTTCTGTGCAAGCACTAGTTTTGGTCCCCACCCGTGAACTTGGCATGCAAGTTACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAAGGGGAGCAGAAGTCATGTATCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGAAGTTTGTGCCAAATGCTCGAAAGACACTTTTTCTCGCTTGAAACCTTGCAGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAACGCAAGTGAATTCTCTTCGGAAGATTTTGACTTCATATTCATCTTGCAATAACCGCCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTCACGACTCTGTGCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTTAGTAAGGTGGAGCCCATGCCATCTCGCCTATATCATAGATTCACAATATGTGATACGAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCTGATGCACCCGATTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTGATCGACTTTCTAAAGACATCATATCAAGGCTCTTTAGATGTCCTCCTTCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGAAAAGGTGGTGGCTATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAATGACTCACATATACAACTTTGATCTTCCCAAAACTGCCATAGATTATCTTCATCGAGCGGGGAGGACTTGTAGAAAACCCTTTTCTGACGTGAATTGTACTGTTACCAGCATTATAGTTCCAGAGGAGAGGTTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTCGTCTGTGAAGAGCTTATTCTATAAACCTTGCCTTGACCTTTACATATTATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	73845	78358	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001864.1	PF00270.24	DEAD	95	268	1.20E-28
Glyur000026s00001864.1	PF00271.26	Helicase_C	365	433	2.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.797
SRR1783600	control	3.689
SRR1783602	moderate drought stress	4.247
SRR1811619	moderate drought stress	4.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.006
DRR006520	Root Summer glycyrrhizin high producing strain	5.102
DRR006521	Root Winter glycyrrhizin high producing strain	6.339
DRR006522	Root Winter glycyrrhizin high producing strain	6.208
DRR006523	Root Summer glycyrrhizin low producing strain	7.341
DRR006524	Root Summer glycyrrhizin low producing strain	7.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.923
SRR2868004	Drought Stress (root)	3.693
SRR2967015	Control (root)	3.127

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.221
SRR9715740	Leaf	7.192
SRR9715741	Leaf	3.288
SRR9715739	Root	2.837
SRR9715742	Root	4.111
SRR9715743	Root	3.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.664
SRR8749028	MeJA induced 9h	2.059
SRR8749029	MeJA induced 9h	2.026
SRR8749030	Uninduced	2.420
SRR8749031	Uninduced	0.559
SRR8749032	Uninduced	0.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.678
SRR8400027	Control - Root	5.563