Gene detail

Gene detail information of Glyur000026s00001856.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	7.00E-82	receptor-like protein kinase 1
NR	XP_008243675.1	0	PREDICTED: LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Prunus mume]
COG	YP_002763346.1	2.00E-18	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q39202\|RLK1_ARATH	4.00E-102	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|A5BLK5\|A5BLK5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN59770.1}

Sequence

Transcript Sequence

>Glyur000026s00001856.1
ATGCAAGACAACAACTCCTTCTGGACATCGCCATCGGGTGATTTTGCATTTGGTTTCCAGAAGATTGAAGAAGATGGGTTCTTACTGGCCATCTGGTTCAACAGAATACCAGAAAGAACCATTGTCTGGTATGCAGCATACCAGTTGTATGGCAGTAAAGGAAACTTAGTAGGAAAGGGATCTAAAGTGGAACTCACCACTGATGGCAGGTTCTTGCTCAAAGACCCCAGCGGCGAGCAGATATGGAATCCCAACAATGATGTTGCTTATGCAGCACTTCTTGATACCGGTAACCTTGTGCTGGTGGACAAATATTCTGTCGTTAGGTGGCAGAGTTCTGTTAGAAGATTCGGATTCTCCGCGGCTCGTTTCGCGCTATCTGGAGACAAACTTCAGTGGTGGGAGGTTCCAGTTTACTCTACAAAAGATGGGAATCTTGTTTTTGGCAGTGGCTTTAAGTGGGTGTTCAACCAATCCGGGGATATTTTCCTTCAGTCTAGTAATGGGAGCATAATCAACAATATATCTTCAAGTGGCCTCTCCACAGAAGATTTTTATCAGAGAGCAATTCTTGAACATGATGGAGTTTTCAAGCACTATGTCTACCCCAGGAGCAATATCTCCGGTAGTGGAGGCTGGTCCACGGGCTGGAATATTAAATCATTCACACCTGAAAATATCTGTAAGAATATCACTGAGGAAACGGGAGGTGGAGCTTGTGGGTTCAACAGCTACTGCACGTTTGATGACAGGAAGATATGCCACTGTCCACCTGCGTATAGCTTCCTTGATCCCAACGATGAGATGAAAGGGTGCAAGCAGGACTTTGTTCCACAGAGTTGCAATCCTGCTTGGGTGATTGTTTATGCGCTGCTGCCGTTTTCAATGATGCCGAATGATAAGTCAAATTCAAAGCTAGTTATCATTGGATCAGTGCTTTTAGGGAGTTCGGGGCTGCTGATCTTTCTCTTTATAGTGGTGGTAGCTTATTTAGCTTCTGCGTCATCCCGGTTTGGCCACAAGGTGGTGGAGCCTAATTCCCAACTCATGACTGACATGAATCTTACAAGTTACACTTATCAAGAGTTAAGCAGAGCAACAAATGGTTTCAATGAAGAACTAGGTCACGGTGCATTCGCAACGGTTTACAAAGGAGTTATCTCTGGAGTCGATGATAACAACCACCTTGTTGTTGCTGTTAAGAAGTTGGATGCCAAGTTCAGAGAAACAGATGAAGAATTTAAAGCAGAAGTGGTTGCAATTGGTCAAACAAATCACAGAAACCTGGTCCAACTCTTGGGATTCTGTGAGGAAGGGGAGCACAAGCTACTAGTATATGAATTCATGAGCAATGGATCGTTAGCAGGGTTGCTTTTTGGATCACAGAGGCCAAGATGGTACAAAAGAAAGGAAATTGCATTGGAAATAGCAAGGGGACTCTTTTACCTGCACGATGAGTGTCGCAACCAGACCATACATTGTGACATCAAGCCCCAAAACATCCTTCTTGACAGCTCCTACACTGCAAGAATCTCAGACTTCGGTTTAGCCAAGCTCTTGAAGCTCGACCAGACCCGAACCGCCACTGCAATCAGAGAACCAAAGGATATGAGTGTTCCTGTCAATGTGAAGGTGGATGTTTACAGCTACGGGATTCTGTTGCTAGAGCTCATATGCTGTAAGAAGAACTTCGATGCAAATGCTGAGAATGATGACATGATGATATTGGCGGATTTGGCATATGATTCCTTCAGGGATGGGAAGTTGAGTTTGCTGGTGGAGGATGATGTGGAAGCGTTGGATGACATGAAGAAGGTGGAAAGGTTTGTGATGACTGCCATATGGTGTATTCAGGAGGATCCATCACTCAGACCAACCATGAAGAAAGTAATACTCATGCTTGAAGGTTCTGTGGACGTGCCTATTCCCCCTGATCCAGCCTCTTTATATGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	45642	47920	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001856.1	PF01453.19	B_lectin	39	133	1.80E-09
Glyur000026s00001856.1	PF07714.12	Pkinase_Tyr	370	632	4.20E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.041
SRR1783600	control	0.046
SRR1783602	moderate drought stress	0.010
SRR1811619	moderate drought stress	0.006

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.156
DRR006520	Root Summer glycyrrhizin high producing strain	0.027
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.047
DRR006524	Root Summer glycyrrhizin low producing strain	0.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.542
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.019
SRR2868004	Drought Stress (root)	0.025
SRR2967015	Control (root)	0.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.599
SRR9715740	Leaf	13.912
SRR9715741	Leaf	33.548
SRR9715739	Root	0.038
SRR9715742	Root	0.399
SRR9715743	Root	0.528

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.120
SRR8749029	MeJA induced 9h	0.023
SRR8749030	Uninduced	0.328
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.220
SRR8400027	Control - Root	0.293