Gene detail

Gene detail information of Glyur000026s00001850

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39390.1	2.00E-55	Ribosomal L29 family protein
NR	XP_004505904.1	2.87E-75	PREDICTED: 60S ribosomal protein L35-like [Cicer arietinum]
COG	YP_002250709.1	2.00E-08	ribosomal protein L29 [Dictyoglomus thermophilum H-6-12]
Swissprot	tr\|Q9M5L0\|RL35_EUPES	5.00E-77	60S ribosomal protein L35
trEMBL	tr\|V7BCS8\|V7BCS8_PHAVU	6.00E-75	Uncharacterized protein {ECO:0000313\|EMBL:ESW14693.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	18878	21103	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001850.1	PF00831.18	Ribosomal_L29	7	64	4.50E-18

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	33.203
SRR1783600	control	33.333
SRR1783602	moderate drought stress	26.031
SRR1811619	moderate drought stress	25.730

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.409
DRR006520	Root Summer glycyrrhizin high producing strain	29.812
DRR006521	Root Winter glycyrrhizin high producing strain	12.539
DRR006522	Root Winter glycyrrhizin high producing strain	12.792
DRR006523	Root Summer glycyrrhizin low producing strain	22.977
DRR006524	Root Summer glycyrrhizin low producing strain	22.704
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.129
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.488

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.922
SRR2868004	Drought Stress (root)	29.453
SRR2967015	Control (root)	22.401

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.161
SRR9715740	Leaf	19.488
SRR9715741	Leaf	11.629
SRR9715739	Root	5.491
SRR9715742	Root	13.331
SRR9715743	Root	10.906

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	194.787
SRR8749028	MeJA induced 9h	44.218
SRR8749029	MeJA induced 9h	97.789
SRR8749030	Uninduced	6.809
SRR8749031	Uninduced	2.577
SRR8749032	Uninduced	3.049

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.297
SRR8400027	Control - Root	35.348