Gene detail

Gene detail information of Glyur000026s00001849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28660.1	8.00E-24	Chloroplast-targeted copper chaperone protein
NR	XP_006591869.1	4.48E-89	PREDICTED: uncharacterized protein LOC100789886 isoform X1 [Glycine max]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	5.00E-14	Copper transport protein ATX1
trEMBL	tr\|I1LR34\|I1LR34_SOYBN	2.00E-89	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G08030.1}

Sequence

Transcript Sequence

>Glyur000026s00001849.1
TTACTGAGTACTTTCAAGTGGGACCCAATGCATTATTCTGCTCTTTAGTCTTTTCCCCTCCTTCATTAGGAAGAAGATTCTTCAGCTACTGGCTACTACTGCTTAAAAAGGCCATTGCTTCTAACTTGTTCTCTCTGGTTTATAACTACCCACCAAGAAAATAAACCACCATATCTACTAAAAACTCGAACACCAATATGAAAGGAATGGATTTGTTCTGTTCTTCCCCTGCTTCCACAGCAATAGTAACTTATAGTATGGACCATGGTTCTNTGGTACGCCGCCGAAGCAGCAAAAGCTACGACCATGATCGAAGGAAAAACCAACCTCATGTCCCTTGTTCATCCCAATTGCCCATTAATCCTAAGCCTTACTTCGAGAAGCATAGAAAGAGTTCAGCAGATAAACAAAACAGTACTGATAGACATAGAAAAAGCTCTGTTCATGTCAACGACCTATTTACTCATCCCACTACTACNGCTGCTGCTTCTGGTTCTTCCAGAAGATATCTCCTTGGTGATGCGCCATTCATTGATTGGGTATCTGAGTACACAGAAATCCCATCAGCAATGGGTCCTCACCATGATGCCAAAGCCATGTCTATGGTTATGAAAAGAACGATTATCTTCCTCTTAAGTCCTCTTCATCACCTCACTCCAAGGACCAGTTACATATGGGTTGTGGTTTTGAGGGTGTCATTGCACTGCAAGGCCTGCGAAGGAAAAGTCAGAAAACATATTTCAAAAATGGAAGGAGTGACATCATTCAGCATAGACATGGAGACAAAGAAAGTGACCATCATTGGAAACGTGACGCCACTAGGTGTATTGGCGAGTGTATCCAAGGTGAAGAATGCACAGCTATGGCCGTCTCAGACATTATCATCACGCTAACATTTCCATGATCGACTTCGACACAATCAGTTATTCACTTATTAATTAACATAAGCTTTTTTTTTTTCACCTCTTCCTTTTTCACCCTTGTTTACTGTTGTTTGATACACCTTCAGGAATGTGTGTGTTTGTATGATTAGAAGTTTTCAGCAATGCTACTATTTTGCAATTTGTAGTACCAAAAAGCAATTTCATTAGAAGTTTGATCGATGACTTGTCAAGTTTTTTGTGTGTCGTGTCGTGTAGATGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00026	14566	16219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000026s00001849.1	PF00403.21	HMA	164	210	4.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.163
SRR1783600	control	12.322
SRR1783602	moderate drought stress	8.363
SRR1811619	moderate drought stress	8.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.810
DRR006520	Root Summer glycyrrhizin high producing strain	8.845
DRR006521	Root Winter glycyrrhizin high producing strain	1.316
DRR006522	Root Winter glycyrrhizin high producing strain	1.232
DRR006523	Root Summer glycyrrhizin low producing strain	7.106
DRR006524	Root Summer glycyrrhizin low producing strain	7.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.702
SRR2868004	Drought Stress (root)	7.142
SRR2967015	Control (root)	9.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.588
SRR9715740	Leaf	6.444
SRR9715741	Leaf	8.719
SRR9715739	Root	2.103
SRR9715742	Root	4.206
SRR9715743	Root	4.493

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.662
SRR8749028	MeJA induced 9h	27.345
SRR8749029	MeJA induced 9h	15.947
SRR8749030	Uninduced	7.427
SRR8749031	Uninduced	1.986
SRR8749032	Uninduced	5.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.962
SRR8400027	Control - Root	11.567