Gene detail information of Glyur000025s00003379 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49000.1 | 5.00E-116 | RNA polymerase III subunit RPC82 family protein |
| NR | XP_007143425.1 | 0 | hypothetical protein PHAVU_007G071300g [Phaseolus vulgaris] |
| trEMBL | tr|V7BC56|V7BC56_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15419.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 574127 | 579540 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003379.1 | PF08221.6 | HTH_9 | 8 | 67 | 5.40E-18 |
| Glyur000025s00003379.1 | PF05645.8 | RNA_pol_Rpc82 | 145 | 320 | 3.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.872 |
| SRR1783600 | control | 6.721 |
| SRR1783602 | moderate drought stress | 6.775 |
| SRR1811619 | moderate drought stress | 6.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.605 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.912 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.033 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.551 |
| SRR2868004 | Drought Stress (root) | 8.738 |
| SRR2967015 | Control (root) | 9.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.438 |
| SRR9715740 | Leaf | 5.213 |
| SRR9715741 | Leaf | 5.099 |
| SRR9715739 | Root | 1.440 |
| SRR9715742 | Root | 4.471 |
| SRR9715743 | Root | 3.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.952 |
| SRR8749028 | MeJA induced 9h | 16.534 |
| SRR8749029 | MeJA induced 9h | 14.139 |
| SRR8749030 | Uninduced | 2.926 |
| SRR8749031 | Uninduced | 2.501 |
| SRR8749032 | Uninduced | 1.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.185 |
| SRR8400027 | Control - Root | 14.658 |