Gene detail

Gene detail information of Glyur000025s00003376

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G20850.1	tripeptidyl peptidase ii
NR	KDO52026.1	hypothetical protein CISIN_1g000645mg [Citrus sinensis]
COG	YP_004270520.1	Tripeptidyl-peptidase II [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|F4JVN6\|TPPII_ARATH	Tripeptidyl-peptidase 2
trEMBL	tr\|A0A067EM57\|A0A067EM57_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO52026.1}

Sequence

Transcript Sequence

>Glyur000025s00003376.1
ATGCATAACCAACACACACTCTTACTCAGGCTCCCCACATTGCCCTCTCTCATCAACCTTCATCATCGCACGAAGGCAAAGGTCATCAGAGAGAGAGTGAGATCCTTCAATAGAAGAACCAGCAATTGGGTTGTTTCCATTCCCAAGGCAATGCTTTGCTCTTCCCTCAGTTCTCGCTGTGGCGGTGATGACGACGATCACAACAACAACAACAACAATAACAACAACGGCAGTGCCACTTTCCACAGCTTCAAGCTGAACGAGTCCACCTTTTTGGCTTCCCTTATGCCCAAAACAGAGATTGGCGTTGACCGTTTCCTCCATTCTCACCCAAACTACGATGGCCGCGGTGCTCTCATCGCTATTTTTGATTCTGGTGTAGACCCNGCTGCTGCTGGATTACAGGTTACCACAGATGGGAAACCAAAAATCCTTGATATCCTTGATTGCACTGGGAGTGGAGATATTGATACTTCAAAGGTGGTGAAGGCTGATGCTGATGGTTGTATATCTGGGGTATCAGGTGCATCTTTGGTTGTCAATACATCATGGAAAAATCCTTCTGGTGAATGGCATGTGGGTTATAAATTGATTTACGAGCTTTTTACAGAAAAGTTGACTTCTCGTTTGAAGAAAGAAAGAAAGAAAAAGTGGGACAAGAAAAACCAGGAGGAAATTGCTAAGGCTGTAAAACAACTTAACGATTTTGATCAGCAACACCGCAAGGTGGAGGATGCTAAACTCAAAAAGGCTCGTGAAGATCTCCAGAATAGAATTGATCTTCTTAGAAAGCAATCCGAGAGCTATGATGATAAAGGGCCTGCCATAGATGCTGTTGTCTGGTATGATGGAGAGGTTTGGAGGGTTGCTCTTGACACACAGAGTCTTGAGGATGATCCAGATTGTGGGAAGCTTGCTAACTTTGTACCCTTAACTAATTATAGGACTGAGAGGAAGTATGGTGTCTTCAGCAAATTAGATGCTTGTACATTTGTTGTGAATGTCTATAATGATGGGAANGTCTTAAGTATTGTAACGGACAGCTCTCCTCACGGTACCCATGTCGCTGGTATAGCTACTGCATTCCACCCAGAGGAACCTTTGTTGAATGGAGTTGCACCTGGAGCGCAATTAATATCTTGTAAAATTGGAGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTCGGGCACTGATAGCAGCTGTGGAGCATAAATGTGATCTTATCAACATGAGTTATGGCGAGCCAACATTGCTGCCAGACTATGGACGCTTTGTTGACCTTGTGAATGAAGCGGTAAACAAGCACCGTCTGATTTTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCNCTAAGCACTGTTGGTGCACCTGGTGGTACATCTTCAAGTATCATAGGTGTTGGCGCTTATGTTTCTCCTGCTATGGCAGCTGGTGCTCATTGTGTTGTTGAACCTCCATCTGAGGGGCTTGAATACACATGGTCTAGCCGAGGACCAACTGCTGATGGAGATCTTGGTGTCTGTATAAGTGCTCCTGGTGGTGCTATTGCTCCTGTTCCTACATGGACTCTTCAACGGCGTATGTTCATGAATGGGACATCAATGGCATCTCCATCAGCCTGTGGGGGAATTGCATTGCTCATAAGTGGAATGAAGGCAGAGGGAATTCCTGTGAGTCCATATAGTGTGAGGAAGGCCCTGGAGAATACATCTGTTCCCATAGGTGAATCACCTGAGGATAAATTATCCACCGGACAAGGGCTTATGCAAGTTGACAAGTGTTATGAATATATACAGCAGTCTCAAAATATCCCATGTGTTTGGTATCAAATAAACATCAAGCAATCTGGAAAAACAAATCCTTCATCACGGGGTATATACCTGAGGGAGGCTAATGCTTGTCGACAATCTACNGAGTGGACGGTGCAAGTTGATCCAAAATTTCATGAAGATGCCAACAAGTTTGAAGAATTGGTTGTGTTTGAGGAGTGCATTGAGTTACACTCTTCAGATAAGACAGTTGTGAAAGCCCCCGAGTATCTACTGCTCACTCATAATGGCCGTACCTTCAACATAGTTGTGGATCCGACCAATTTATGTGATGGTCTGCATTATTATGAGGTCTACGGTATTGACTGCAAAGCACCATGGCGTGGTCCTCTTTTCAGAATTCCAATTACTATAACCAAGCCCATGTCTGTAACTAATAGACCTCCACAAGTTTCATTTTCAAAGATGTTATTCCAGCCAGGCCATATCGAAAGGAAATATATAGAAGTGCCACATGGTGCATCTTGGGTTGAAGCAACCATGAACATATCAAGTTTTGATACAGCTCGAAGATTTTTTGTGGACACAATTCAGATATGTCCATTGCAAAGACCTTTAAAATGGAGGGCTGTGATAACCTTTTCTTCTCCTGCTGCCAAAAGCTTCACCTTTAGGGTAGTAGGTGGTCAGACGTTGGAACTAGTCGTAGCTCAATTTTGGTCGAGTGGCATAGGGAGTCAGGAGACAACCAATGTGGATCTTGAGATTGTGTTTCATGGTATAAAAGTCAATCAAGGGGAAATTGTACTTGATGGGAGTGAAGCACCAGTCAGAATTGATGCTGAAACACTACTTGCATCTGAGAAACTTGCACCTGTTGCATTTCTAAATAAGAAAGTATATTCAAGTGGAGATGTCTATCCAAACTCTACAAAACTTCCCAAAGGAGAATACAATTTACAGCTATATGTGAGGCATGACAACTTGCATATTTTGGAGAAGATGAAGCAACTGGTGTTATTCATTGAGCGAAATTTGGAAGAGAAGGACATCATTCGATTATGCTTTTTTTCTCAGCCAGATGGTCCACTGGTAGGAAATGGTTCCTTTAAGTCCTCAACATTAATTCCAGGTATAAAAGAAGGATTTTATCTTGGTCCACCACCAAAAGACAAGCTTCCCAAGAACTCTCTACCAGGATCTGTATTGGTGGGATCAATATCATACGGAAAACTATCATTTGCTGGTCAGGGGGAGCATAAAAATCCAGAAAAGCACCCTGTATCACATCGGATTTCTTATGTAGTTCCTCCAACTAAGATTGATGAGGACAAGGGGAAAAATTCTTCCGTATCTTCCAAGAAGACAGTTTCTGAACGTTTAGAAGAAGAGGTACGAGATGCAAAAATAAAAGTGTTTGGAGGCCTAAAACAAGAAAGCGATGAAGAGCGCTTGGAATGGACCAAGTTGTCTGCCTCACTNAAATCAGAATATCCAAAGTACACTCCATTGCTTGCAAAGATTTTGGAAGGCTTGGTTTCTAGGAGTAATATCAAAGACAAATTCCATCATGATGAAGAGATAATTGATGCATCAAATGAGGTGATCGACAGTATTGATAGAGAAGAGTTGGCAAAGTTTTTCGCACTGAAAAATGATCCGGAAGAAGAGGAAGCAGAGAAAATCAAGAAAAAGATGGAATCAACCCGGGACCAATTAGCAGAGGCACTTTACCAAAAGGGGCTTGCACTGGCGGAGATCGAGTCTTTAAAGTCAAAGGAGGTAGATAATTCCCAGGCTTCGGCTGCAACAGAAGGTGATGGCATTAATCCAGACTTGTTTGAAGAGAANTTGAATGAACTGAAGAAATGGGTTGATGTTAAGTGCTCAAAATATGGAATCCTGTTGGTGACACACGAGAGGCGTAGTCAAAGGCTTGGGACAGCATTGAAGGTACTGAGTGACATAATTCAAGAANATGCAGAGCCTGCCAAGAAGAAACTCTGTGAACTAAAGNTCTCTTTGCTTGAGGAAATTGGATGGCCTCATTTGGCTACACATGAGAGACAGAGGATGCTTGTGCGTTTTCCCCCTACCTTCCCCCTTTTCTAGGATATCTTGTTTTTGTTGGAGTTTCCATTCTTTTTTTCCTTTTTTTTGGTCAAGAGTTTCCATTCTTTATCAAACTACCTT

Protein Sequence

>Glyur000025s00003376.1
MHNQHTLLLRLPTLPSLINLHHRTKAKVIRERVRSFNRRTSNWVVSIPKAMLCSSLSSRCGGDDDDHNNNNNNNNNGSATFHSFKLNESTFLASLMPKTEIGVDRFLHSHPNYDGRGALIAIFDSGVDPAAAGLQVTTDGKPKILDILDCTGSGDIDTSKVVKADADGCISGVSGASLVVNTSWKNPSGEWHVGYKLIYELFTEKLTSRLKKERKKKWDKKNQEEIAKAVKQLNDFDQQHRKVEDAKLKKAREDLQNRIDLLRKQSESYDDKGPAIDAVVWYDGEVWRVALDTQSLEDDPDCGKLANFVPLTNYRTERKYGVFSKLDACTFVVNVYNDGXVLSIVTDSSPHGTHVAGIATAFHPEEPLLNGVAPGAQLISCKIGDSRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFVDLVNEAVNKHRLIFVSSAGNSGPALSTVGAPGGTSSSIIGVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAIAPVPTWTLQRRMFMNGTSMASPSACGGIALLISGMKAEGIPVSPYSVRKALENTSVPIGESPEDKLSTGQGLMQVDKCYEYIQQSQNIPCVWYQINIKQSGKTNPSSRGIYLREANACRQSTEWTVQVDPKFHEDANKFEELVVFEECIELHSSDKTVVKAPEYLLLTHNGRTFNIVVDPTNLCDGLHYYEVYGIDCKAPWRGPLFRIPITITKPMSVTNRPPQVSFSKMLFQPGHIERKYIEVPHGASWVEATMNISSFDTARRFFVDTIQICPLQRPLKWRAVITFSSPAAKSFTFRVVGGQTLELVVAQFWSSGIGSQETTNVDLEIVFHGIKVNQGEIVLDGSEAPVRIDAETLLASEKLAPVAFLNKKVYSSGDVYPNSTKLPKGEYNLQLYVRHDNLHILEKMKQLVLFIERNLEEKDIIRLCFFSQPDGPLVGNGSFKSSTLIPGIKEGFYLGPPPKDKLPKNSLPGSVLVGSISYGKLSFAGQGEHKNPEKHPVSHRISYVVPPTKIDEDKGKNSSVSSKKTVSERLEEEVRDAKIKVFGGLKQESDEERLEWTKLSASLKSEYPKYTPLLAKILEGLVSRSNIKDKFHHDEEIIDASNEVIDSIDREELAKFFALKNDPEEEEAEKIKKKMESTRDQLAEALYQKGLALAEIESLKSKEVDNSQASAATEGDGINPDLFEEXLNELKKWVDVKCSKYGILLVTHERRSQRLGTALKVLSDIIQEXAEPAKKKLCELKXSLLEEIGWPHLATHERQRMLVRFPPTFPLF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	539233	553904	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003376.1	PF00082.17	Peptidase_S8	120	598	1.10E-57
Glyur000025s00003376.1	PF12580.3	TPPII	890	993	2.10E-28
Glyur000025s00003376.2	PF00082.17	Peptidase_S8	120	569	7.00E-58
Glyur000025s00003376.2	PF12580.3	TPPII	861	964	2.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.070
SRR1783600	control	8.042
SRR1783602	moderate drought stress	10.091
SRR1811619	moderate drought stress	10.002

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.923
DRR006520	Root Summer glycyrrhizin high producing strain	6.007
DRR006521	Root Winter glycyrrhizin high producing strain	1.693
DRR006522	Root Winter glycyrrhizin high producing strain	1.660
DRR006523	Root Summer glycyrrhizin low producing strain	3.038
DRR006524	Root Summer glycyrrhizin low producing strain	3.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.010
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.664
SRR2868004	Drought Stress (root)	15.257
SRR2967015	Control (root)	11.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.361
SRR9715740	Leaf	12.164
SRR9715741	Leaf	10.921
SRR9715739	Root	0.735
SRR9715742	Root	6.562
SRR9715743	Root	4.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.169
SRR8749028	MeJA induced 9h	6.748
SRR8749029	MeJA induced 9h	3.727
SRR8749030	Uninduced	2.436
SRR8749031	Uninduced	1.728
SRR8749032	Uninduced	1.975

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.987
SRR8400027	Control - Root	14.778