Gene detail

Gene detail information of Glyur000025s00003375

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23870.3	8.00E-150	Pectinacetylesterase family protein
NR	XP_003535610.2	0	PREDICTED: protein notum homolog isoform X1 [Glycine max]
trEMBL	tr\|K7LL20\|K7LL20_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G37890.2}

Sequence

Transcript Sequence

>Glyur000025s00003375.1
ATTTTTAGTATTTATTATTATCATTGAAAAATCGATGGCGACGCCAACGCCAACATTTTCCTTTTGCACGGAACTCATCTCAATCCCTTCCGCATAAGCAATCAATGAGGCGTCGATTTCACTTACGTGGATTTCCAATCCCGGTTCGTTCCAAATCCATTGTGATTTCTTCCTTTATTACTCCTCTGCGCCTTAAAACCAAGTCCAAACAAAGAATAAAACAACAGAGCAATAGCAGTGAGCTCGCGCTTATATTTAGATCTCACTTTCTTAATTCCATTTTGTCCTGAGAGAATCGGAATCCAGGGAAGAAAAAACGATTCCCTACTTTTTCTCCGACGATGAACTTCGCCGTGGCTTTCACATTCTTCTATCTCACCACGGTGGCGCCATCGCGCATTCGCTCGGAACAGAGGCTTCTGGTGAACATGACGCTGGTTCCGAACGCACGTGCTACCGGCGCTCTTTGTTTGGACGGGAGTTTACCGGCGTATCATTTGCACAGAGGATTTGGCGCAGGGCAAAACAACTGGCTTCTACAATTTGAGGGAGGTGGGTGGTGCAATGACGTGGCATCATGCTTGGAGAGAGCTCAATCTCGCCGGGGTTCAACACGTTACATGACCAAGTGGGAGGTCTTCTCTGGTATTTTAAGCAACGATGCCAACCTTAATCCAGACTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGAGGTTCATTTACNGGAGACAGAGTGTTCAATAATGGGACAAGGACACTTTACTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTGGCGACCTTCTACCAAAAGGTTTGGGAAAGGCACGCAAGGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCAACCTTTCACCATTGTGACAGCTTAACCAANTATTTGCCAACGATTACTAGTGTTAAATGCTTGAGTGATGCTGGTTTTTTCCTTGACGGAAGAGATGTAAGTTTGAACCACACAATGAGGTACTTTGTCAAAAGTCTAGTTTCCTTCCAGGGGATAGAGAAGAACCTGAATAGAAACTGCACTAGTGCGCTGTTCTTTCCAGATTTGTGCTTCTTTCCACAATATGCATTGAGATATATATCAACACCATATTTTATCTTGAACTCTGCCTATGATGTATTCCAATTCCATCATATATTGGTGCCACCTTCTGCTGATNTGCACGGACGCTGGAACCACTGCAAGCTGAACCCAGCGGCATGCACATCAGACCAAATTAATACATTGCAAGGTTTTAGGTTCGACATGCTTGGAGCTTTGAGACCGTTCTCTGTGTATTCAAAAAGAGGGGGAATGTTTATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTTGCAAGAAACATGGTTTGGAGCTGATTCTCCAAGAATAAACGACAAGACTATTGCAGAAACGGTTGGCGATTGGTCACTTGGAAGATTAAACTAAAATTTGTCCACAAGCTTCTCTAGTTCTCCTAAAGAATCCGAGTTCTCCCAAAAAAAGGATTGAGAGGGTTTTTTTTGGTTCAAAGCCATACAAGTACACAGTGAATGCTAGGCAGATAGAGAATTCTTTGATAAAGGAACCAAAAGAGAAAATGTGATTTGAATGATTATTTTCAATTATTTTTCATTCATTACTNGTTCTTTACTTAATAAAAAGTCAATTGGCTTTTGTCTCGTGTCTGAAAGCTCTCATCAACTGTATGCATCATGTCTTAAACCTTGATACATGATGTTGTCACCCCCTCCGTTACCCCCATGGGCACACCAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	528464	538731	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003375.1	PF03283.8	PAE	22	372	2.50E-140

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.312
SRR1783600	control	2.295
SRR1783602	moderate drought stress	1.321
SRR1811619	moderate drought stress	1.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.592
DRR006520	Root Summer glycyrrhizin high producing strain	10.459
DRR006521	Root Winter glycyrrhizin high producing strain	3.864
DRR006522	Root Winter glycyrrhizin high producing strain	3.662
DRR006523	Root Summer glycyrrhizin low producing strain	9.658
DRR006524	Root Summer glycyrrhizin low producing strain	9.237
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.377

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.793
SRR2868004	Drought Stress (root)	17.833
SRR2967015	Control (root)	18.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.877
SRR9715740	Leaf	20.009
SRR9715741	Leaf	34.348
SRR9715739	Root	0.548
SRR9715742	Root	3.673
SRR9715743	Root	2.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.381
SRR8749028	MeJA induced 9h	12.839
SRR8749029	MeJA induced 9h	5.524
SRR8749030	Uninduced	7.540
SRR8749031	Uninduced	2.870
SRR8749032	Uninduced	2.449

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.204
SRR8400027	Control - Root	15.319