Gene detail

Gene detail information of Glyur000025s00003373.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G24020.1	NIN like protein 7
NR	KHN12143.1	Protein NLP7 [Glycine soja]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	Protein NLP7
trEMBL	tr\|K7N3R8\|K7N3R8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G29960.2}

Sequence

Transcript Sequence

>Glyur000025s00003373.1
GCAAGTGCCCTTCTTTTTGGTAGTTGGTGCCACAACAGGAAAGTTTTTTTTCTTTCTTTTCTTTATTTTAATTTCATTGAATAATTTATTCACCCCTTTGTCGCAACTTGCAAGTGGTAGAGCCATNGTAAAATTTGACATGGAATCTGACTCTCTATGCATTCTTCAAATTTTTTTTTTTACCCATCATCACCATCACNATCATCAATCTTCGTCTATTCTATGCTCTCCTCAAATTGCTCCTCACAAAGTTCCAATCTTCACCACCTTGCACCCACAAATCACCCCTCAAAATAGCACNTTGAGAAAATGTCAGAATCTGAGGAAGAAAACACTGATTTCCCTCCAAAGGGGAAGCCAACATCNGAGGAACCTGGTTGTTGTACCATGGATTTTGATCTGGACCTGGAAAGTTCATGGCCCTTGGATCACATGTCCTTTGTCTCCAACCCCATGTCACCTCTTGTGTTCTCCACCATCTCTGACCAACCTTCCTCTCCTCTCTGGGTCTTCCCTGATGGAGAAGATGCCAGGGTTGCAGCTTCAGCTTTCTCTGATTGCTACAAGATCTTCTCTTGTGATTCAAATTCAGTAACTGAGAAGCCAGTGGAGAATGTTGACAACAAGAAAATTTTGCCACCAGTTGTGGCTCTGCCACCAGTTGAAAATTTGGGTGGATATTGTTTAATCAAGGAAAGGATGACACAAGCTCTTCGCTACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAACGGAAATCGGTATGTGCTAACAACTTCAGGCCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACGGTGTCCCTCATGTACATGTTTTCTGTGGATGGAGAAAATGANGGAAGTCTGGGACTTCCTGGCCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGCGATCATGCTCAACACTACAACGTTCGTGGAACGTTGGCTTTGCCTGTGTTTGAACCTTCTTTGCAGTCTTGTGTTGGTGTACTAGAGTTGATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGACCATCCATACACTCAGATTTGCAATGAAGGCCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAGACTCATAATTTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCACCGGAGTATTTTGGCACATGGTGGTGGTTTGAAGAAAAGCTGTTCTAGTTTTGATGGTAGCTGCATGGGGCAAGTTTGCATGTCTACAACGGAGATATCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGCGAGGCGTGTAATGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCATGGCATGAGCTTCTGCACAAACATTACCCAGTTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTCTTTTGCAATCTGTTTACGGAGCCCTNGTACCGGAAGTGATGATTATGTGTTAGAGTTTTTTCTGCCTCCTAGGATCACAGATTTTCATGAACANAAGACACTGTTGGGATCCATATTGGCAACAGTGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGAAGATGGTTCAGTTGAAATTATTGAAGTAACAAATGAAAGAGTTCATCTTAAGCATGAGTCTATTCCAATTGCACAATCTATTAAATCACCTCCTAGACCTGATGCCTCACCAAATATGGGCGAGGAAGTGNCACAGGATCCATCAGAACAACAAATAATGATGTACTGTAATAATGACATAAATGAAGGAGGCATTCATGGTGAAAATGTAGGTAGAAGCATTGATCAGATGTCTTCCTTAGAGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAGCGTTATTTCGCTGGGAGTCTTAAAGATGCCGCAAAGAGNCTTGGTGTTTGCCCTACAACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTTTCCAAGCTCAAGCGTGTNATTGAATCCGTCCAAGGTGCTGAGGGAGCTTTTGGTTTGAATTCTCTCAACACATCAAGTCCACATCCAATGGTTGGTTCCTTTCCCGAGCCTTCTACTCCAAATAAGTTCAGCCAGCAAGCCTCATTAAGCATGAGGCCAACAGACCCTCAGCTGAAAGAGAATGGATTTGATGNCCCCAAAGTATTGGAAACAAACATACAGGCTGGAATGGAAGATCAATTGCTAGGAGGAAGGACACTAGGCATTGAGAAAGTGATCAACGATAAAGGCGGGTCTATTCAGGATCCAAAAAGGACTACTAGAACTAGGAGTGGCTCCAGTGAAGAAGATAGCACAAATCCTACTTCTCATGGATCATGCCATGGTAGTCCCCCTATTGAAAGTTCAACCATAAAAGACATATTCATTGCATCCAACAATGAGCAATGTGTTGTGGTGAGGGGATCACCAGAGTCAAGACTGCAGCCAACTAATAACACATTCAACTCTCCAACTTCTTACCCTATGCCTGACAATGTGGTAACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGTTCTAAGGACTTGAGAAATCTGTGTCCTTCGGTAGCCGAGGCCATTTTGGAGGATCTGAATCCAGAAGCTTGTGGGACTAATCCCCCAGTTTCTGATTTGGCTCCAAAACANTGTGTGGACACTACTCTTGATAAATCAGTGACAGTGACACCTTTTGCAGCTAGGAAAGAAGTGAAGAATGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCTTTGACCTGTGGCATTGTGGAGTTGAAAGAAGAAGTTGCCAAGAGGTTGAAACTAGAGGTGGGGACATTTGATATCAAGTACCTGGATGATGATCATGAGTGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCTNGTGAGAGCTCGGGGGAGTGACAAGTGGCTGTACATAAGTTCAGCTTGTAATCTATTANCTAGGTTCTTGTGGTCTTTAGGATGAGGATAGGCAAAAAATAGATTTTGGTTAAGATCTTGCTCAACTCAAATTGTAAGAAGCTTGAGATTAGATTAAAGAATTTTCACTTTCTTGAATCTTTGGTATCACTCAAAAGTAAATCCATCATGATAAAAAGCT

Protein Sequence

>Glyur000025s00003373.1
MSESEEENTDFPPKGKPTSEEPGCCTMDFDLDLESSWPLDHMSFVSNPMSPLVFSTISDQPSSPLWVFPDGEDARVAASAFSDCYKIFSCDSNSVTEKPVENVDNKKILPPVVALPPVENLGGYCLIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENXGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCVGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSILAHGGGLKKSCSSFDGSCMGQVCMSTTEISFYIIDAHLWGFREACNEHHLQQGQGVAGRAFLSHGMSFCTNITQFCKTDYPLVHYALMFGLTSSFAICLRSPXTGSDDYVLEFFLPPRITDFHEXKTLLGSILATVKQHFQSLKIASGVELEEDGSVEIIEVTNERVHLKHESIPIAQSIKSPPRPDASPNMGEEVXQDPSEQQIMMYCNNDINEGGIHGENVGRSIDQMSSLENKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKXLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLNTSSPHPMVGSFPEPSTPNKFSQQASLSMRPTDPQLKENGFDXPKVLETNIQAGMEDQLLGGRTLGIEKVINDKGGSIQDPKRTTRTRSGSSEEDSTNPTSHGSCHGSPPIESSTIKDIFIASNNEQCVVVRGSPESRLQPTNNTFNSPTSYPMPDNVVTELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLNPEACGTNPPVSDLAPKXCVDTTLDKSVTVTPFAARKEVKNVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSXESSGE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	503863	508751	-

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003373.1	PF02042.10	RWP-RK	586	636	9.60E-26
Glyur000025s00003373.1	PF00564.19	PB1	899	979	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.761
SRR1783600	control	24.713
SRR1783602	moderate drought stress	22.189
SRR1811619	moderate drought stress	21.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.179
DRR006520	Root Summer glycyrrhizin high producing strain	14.077
DRR006521	Root Winter glycyrrhizin high producing strain	9.515
DRR006522	Root Winter glycyrrhizin high producing strain	9.277
DRR006523	Root Summer glycyrrhizin low producing strain	11.939
DRR006524	Root Summer glycyrrhizin low producing strain	11.946
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.328

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.016
SRR2868004	Drought Stress (root)	36.667
SRR2967015	Control (root)	38.183

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.589
SRR9715740	Leaf	28.253
SRR9715741	Leaf	26.017
SRR9715739	Root	3.123
SRR9715742	Root	15.160
SRR9715743	Root	12.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.354
SRR8749028	MeJA induced 9h	8.479
SRR8749029	MeJA induced 9h	11.078
SRR8749030	Uninduced	18.215
SRR8749031	Uninduced	31.902
SRR8749032	Uninduced	36.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.465
SRR8400027	Control - Root	29.756