Gene detail information of Glyur000025s00003371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02450.1 | 7.00E-45 | Ribosomal protein L36e family protein |
| NR | XP_003555154.1 | 8.47E-70 | PREDICTED: 60S ribosomal protein L36-3 [Glycine max] |
| Swissprot | tr|Q9LZ57|RL363_ARATH | 7.00E-57 | 60S ribosomal protein L36-3 |
| trEMBL | tr|I1LDP9|I1LDP9_SOYBN | 8.00E-70 | 60S ribosomal protein L36 {ECO:0000256|RuleBase:RU000665} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 494220 | 496143 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003371.1 | PF01158.13 | Ribosomal_L36e | 6 | 101 | 2.10E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 62.709 |
| SRR1783600 | control | 62.453 |
| SRR1783602 | moderate drought stress | 51.008 |
| SRR1811619 | moderate drought stress | 50.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 236.677 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 234.606 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 134.816 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 131.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 196.655 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 192.985 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.964 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 489.540 |
| SRR2868004 | Drought Stress (root) | 293.955 |
| SRR2967015 | Control (root) | 283.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 154.109 |
| SRR9715740 | Leaf | 148.018 |
| SRR9715741 | Leaf | 143.279 |
| SRR9715739 | Root | 156.458 |
| SRR9715742 | Root | 154.610 |
| SRR9715743 | Root | 145.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 341.069 |
| SRR8749028 | MeJA induced 9h | 182.805 |
| SRR8749029 | MeJA induced 9h | 261.352 |
| SRR8749030 | Uninduced | 59.956 |
| SRR8749031 | Uninduced | 37.585 |
| SRR8749032 | Uninduced | 75.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 366.065 |
| SRR8400027 | Control - Root | 306.294 |