Gene detail

Gene detail information of Glyur000025s00003370

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G49050.1	alpha/beta-Hydrolases superfamily protein
NR	XP_004496552.1	PREDICTED: uncharacterized protein LOC101492754 [Cicer arietinum]
trEMBL	tr\|I1LDP8\|I1LDP8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G37820.1}

Sequence

Transcript Sequence

>Glyur000025s00003370.1
ATGTCAATTGTGTGTGGCTTGCCTCTTGTTGAGTGTGTGTACTGTCTAGCTTGTGCTCGTTGGGCTTGGAAAAGATGTCTTCATACAGCAGGCCATGACAGTGAAAATTGGGGCCTTGCCGCAGAAGAAGAGTTTGAGCCTGTCCCTCGCCTATGCCGCTATATTTTAGCAGTGTACGAAGATGATCTTCGACACCCTCTTTGGGCACCTCCTGGTGGCTATGGAATTAACCCTGACTGGTTAATACTCAAGAAGACATATGAAGATACAAAAGGGAGGGCCCCACCATATATACTTTATCTTGATCATGATCATGCTGATATAGTTCTTGCCATTAGGGGACTAAATTTGGCAAAGGAGAGTGACTATGCAGTTCTGCTGGATAATAGATTGGGGAAGAGAAAGTTTGATGGAGGGTATGTTCACAATGGGCTGTTGAAGGCTGCTGGATGGGTTATGGATGCTGAATGTGAAATTTTGAGGGATCTGGTAGAGAAGTATCCAGATTATTCTCTTACTTTTGCTGGACATTCCCTTGGATCAGGAGTAGCAGCAATGTTGAGCATGGTGGTGGTACAGAATCGAGATAGACTTGGAAATATTGAGAGGAAGAGGGTCAGGTGCTACGCTATTGCGCCAGCTAGGTGTATGTCGCTTAACTTGGCAGTCAGATATGCAGATGTCATCAACTCCGTTGTGCTTCAGGCAAGTTATCAGAATCTTATTTGTTTAGTTGAAGAATCCATGACATTCCTTCGAATATTTTTACATCCAGTAGAACACGATGAAGGTGAAATTAGAGCATTTGATGACTTCTTACCGAGGACAGCCACTCCATTGGAAGATATATTCAAGTCTCTTTTCTGTTTGCCATGCTTATTGTGCTTGAGGTGCATGAGGGATACATGTATACCAGAGGAGAAGATGCTGAAAGATCCAAGGAGACTCTATGCACCTGGTCGCCTTTATCACATTGTTGAGAGAAAGCCTTTCAGACTGGGAAGGTTTCCACCAGTTGTGAGGACAGCAGTGCCTGTAGATGGAAGGTTTGAGCATATAGTCCTTTCTTGTAATGCCACATCAGATCATGCCATTATTTGGATAGAGAAAGAGGCCCAAAGGGCTTTGGATTTGATGAGGGAGAAAGACAATGCCATGGAAGTACCTGCAAGGCAAATCATGGAGCGTCAGGAAACATTAACCAGGCACAGCCAAGAATACAAAGCAGCATTACAAAGGGCTAAAACATTGGATGTCCCACATGCTTATACACCACCATCACAGTATGGAACTTTTGATGAGGAGGGAGAGGAGAGTTCAAGAAGGTCAGAGGCTGAGTTTTCTCTTGGTTCAACTAATAGGAGTACAGTGGATGAAACTTGGGATGAATTGATTGAGCGTCTCCTTGACNAGGATGAGCATGGCCACAAGGTGCTCAAGAAATGATATGATCATGTAAACTTATGGGGACAAGAATGTAGTATAGATTGTTGTCCTGAACAAAAATTCGTTCATTCTTTTGTGATTTTTGGTGTTTAGTTTAGCTCGAAGAGGGGAATAATATGGAATGAAGATTGATGAATTCGTTAGAAATTGTTGGGATTCAGGTTCTCTTGTTAAGCTTCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	488146	491271	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0016042 lipid catabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003370.1	PF03893.11	Lipase3_N	9	74	1.60E-21
Glyur000025s00003370.1	PF01764.20	Lipase_3	109	237	2.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.897
SRR1783600	control	3.745
SRR1783602	moderate drought stress	7.697
SRR1811619	moderate drought stress	7.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.807
DRR006520	Root Summer glycyrrhizin high producing strain	9.830
DRR006521	Root Winter glycyrrhizin high producing strain	0.993
DRR006522	Root Winter glycyrrhizin high producing strain	1.019
DRR006523	Root Summer glycyrrhizin low producing strain	6.386
DRR006524	Root Summer glycyrrhizin low producing strain	6.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.800

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.401
SRR2868004	Drought Stress (root)	20.098
SRR2967015	Control (root)	18.418

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.352
SRR9715740	Leaf	10.741
SRR9715741	Leaf	12.822
SRR9715739	Root	3.475
SRR9715742	Root	6.987
SRR9715743	Root	7.162

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.122
SRR8749028	MeJA induced 9h	7.217
SRR8749029	MeJA induced 9h	7.324
SRR8749030	Uninduced	10.011
SRR8749031	Uninduced	4.235
SRR8749032	Uninduced	3.730

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.726
SRR8400027	Control - Root	24.512