Gene detail

Gene detail information of Glyur000025s00003367

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49055.1	2.00E-23
NR	XP_003592260.1	2.44E-152	hypothetical protein MTR_1g100880 [Medicago truncatula]
Swissprot	tr\|Q5XVA8\|Y3905_ARATH	2.00E-33	Uncharacterized protein At3g49055
trEMBL	tr\|G7IES8\|G7IES8_MEDTR	6.00E-145	ATP-binding protein, putative {ECO:0000313\|EMBL:AES62511.2}

Sequence

Transcript Sequence

>Glyur000025s00003367.1
CTACATGGTAGAACGAGACTGTAGAGCAGCCCCCGCGAAAACTTGAAAGTACCTTCCACTTACCAACCTCCTTCTCTGTTGACTGGTAGTTTTGATTTTGGAACTCCTCTTTTTTCCTGCTCCTTTAACTTTGCTTCTCTTCTCTCTTGATGAAGATCCCCAATCACCCACTATTATTACACGCAACATGGAACAACAATCCTCTCAACCATCACCCCAAGCCAAACTCAACAACCCATATCCACCCACTGTTTTTCATTCCGATAAAGTTCCTTACTTTGAAACGGTTTTGAAAGGAGAACAAGATGGGTTGGTGAGAGAAGAAGTGGAAGGTTTCAAAGAGAGAAATGGGTTGATGTTAAAGGCTTTTGAGTCTCTCACTTCAACGAAGGATTGTTTATCTAGAGTAATAGAGGGGCTAGAGGGAGAAAAGGATGAAACTTTTGTCAGAGAAGGTGAGGAATCAGGGGAGTTATTATTGGAAGAGGCAAGGTTGATCTATAGGCTTGCAACTGAGGTGGAAACAAGGGTGGATAAGTATAAGGAGTTGAGGAGGAAGGAGAAGAGAGAGTTGGAGAATAGTTTGATCAGTTTAACTGAGGAGAATAGGGATATCAATAACTTGCTTAGGGTTGCTTTGTTGGAGAAAGAAGCACTGGAGAAGAGAATTAAGGGACATGACCATAAAAGGATGCCCCTTTTGCAGTTTGCTGAGTTTGGATTGCAGAAAGTTGGGTTTGGGTTCATGATAGGAGGTGGTAACAATGAGCAACCAACAGATAGTTCTGAGGCTGCTAGCAAATCAGATAGTAGTGAGTGTGAAGAGGAAGTTGTTACTCTGGCCTCAACAGTGGAAAGGATAATGAAGAATCTACGTCTTGAAATCACTCAATTGAGGAGATCCTTGGAAGAGTCTAGGTCAGACACAGAGCGCCTCCAGTGTCTCACAGAGAAACAATCCAAAGAAATTGCAGAAAATAAAGTCTACATCAAGGAGTTAGAAGATAGAGAGAGAACCTTGGCTCAAAATGTAATCACCTATTTGGTCAATAAATGGGATAACCATTCCCTAACAACAAAAGCTCTCTCTCACTAACTTCTTCCTTTTTCTCTGACTGCTGAAAGGTAGAGGAGTTTTTGATGGAAATCAAAGAAGCAGAAGAAGAAGTAGCTAGGTGGAAGGAAGCTTGTGAATTGGAAGTTAAAGCTGGAAAGAAGGAGATTGAAGAGCGTGACAAAATGGTGGCTGCTTTGAAACAAGAACTGCAGAAAACTAAGGCTGCTTTGGACATATCCAATGGAAAATTAAGGCTCAAAGAAGAACTTGCAATCACTGCAATAGCTGCACAGGAAGCAGCAGAGAGGTCTTTGCAGCTGGCTGATAGTAGAGCAGTTGAACTTCGCCGGCGGATTGAGGAACTAACCAGACAACTAGAGGAAGCAGAGAAACGTGAACGTAGTAGCCATAAAGTGAGACGTATGTGTTGGCCATGGCAAGTTTTTAAATTCAGCTCNAGCAATATTGCACACTCTAGAGTTGGAAATGCAAAACGGATGCTACCAGAAATGCAAGCCTTCCTCCAATGAGGCAATGAAATGTATATAAACATATAGTATAATTTTCCAGAGCAGGGAGTTGAATCATGTTTAACTCGAATTTTCTCTGTGGTTCGCATATTGCTATTGTAAAAGTGGGATATTTTANTGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	480778	483898	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.524
SRR1783600	control	0.532
SRR1783602	moderate drought stress	0.934
SRR1811619	moderate drought stress	0.929

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.298
DRR006520	Root Summer glycyrrhizin high producing strain	1.288
DRR006521	Root Winter glycyrrhizin high producing strain	2.840
DRR006522	Root Winter glycyrrhizin high producing strain	3.034
DRR006523	Root Summer glycyrrhizin low producing strain	1.337
DRR006524	Root Summer glycyrrhizin low producing strain	1.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.279

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.663
SRR2868004	Drought Stress (root)	3.700
SRR2967015	Control (root)	2.910

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.003
SRR9715740	Leaf	7.253
SRR9715741	Leaf	6.854
SRR9715739	Root	0.000
SRR9715742	Root	0.181
SRR9715743	Root	0.621

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.440
SRR8749028	MeJA induced 9h	0.630
SRR8749029	MeJA induced 9h	0.160
SRR8749030	Uninduced	2.060
SRR8749031	Uninduced	0.877
SRR8749032	Uninduced	0.322

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.531
SRR8400027	Control - Root	1.988