Gene detail

Gene detail information of Glyur000025s00003361

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23420.2	7.00E-135	NAD(P)-binding Rossmann-fold superfamily protein
NR	KEH43680.1	0	NAD(P)-binding rossmann-fold protein [Medicago truncatula]
COG	YP_001830924.1	8.00E-65	short-chain dehydrogenase/reductase SDR [Beijerinckia indica subsp. indica ATCC 9039]
Swissprot	tr\|Q6RVV4\|TIC32_PEA	0	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|F6H6K5\|F6H6K5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47861.1}

Sequence

Transcript Sequence

>Glyur000025s00003361.1
GCAAAACCTTTCCTATCTATGCCCACCTGGTATTTGTGCTGCCCACTTGATACTGCAAACCATTTCTTCTGCTCATTTAATTTAGTGATGTCATAACTCACAACAAATACTAAAGAAAAAGAACAGTTAGATACAAATTGTATCCNTTCATTTCAAATCATAGCATCCGTTTCGTGTACTGCATATCTCGCAGTGCCTGCTTCTGTAACTGTGTGGCAGAGAGAGAGACAGAGAGAGAGAGAGAGGATGTGGCCATTCAGCAGAAAAGGGGCTTCTGGGTTTTCATGGACTTCGACTGCCGAACAAGTTACTCATGGAATCGATGCCACTGGCCTCACTGCCATTGTCACAGGAGCATCCAGCGGCATTGGCGCTGAGACTACACGCGTTCTTGCTTTGCATGGTGTCCATGTGATTATGGCCGTGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAGGCGATACTTAAGGAGATTCCGTCAGCTAAAGTTGATGCCATGGAGTTAGACCTCAGCTCAATGGAGTCTGTCAAGAAATTTGCATCAGAATTTAATTCCTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTATGGCATGCCCCTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAATCACTTGGGTCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAGCAAGTGAAAGTAAGAAAGAAGGAAGAATTATTAATGTCTCCTCAGCTGCTCACCAATTTGTGTATTCTGAAGGAATCCGTTTTGACAATATTAATGACCAATCAAGTTACAACAACTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTCGCAAGACGTCTCAAGGAAGATGGGGTGGATATCACTGCAAATTCTGTTCATCCAGGAGCCATTGTCACCAATCTTTTCCGTTATAACAGTGCAATAAACGGTCTAATAAATGTGGTTGGGAGACTTGTCATGAAAAATGTCCAGCAGGGAGCAGCGACATCATGCTATGTAGCATTGCACCCACAATTAAAGGGAGTCAGTGGCAAGTATTTTTCAGACAGCAATGTGGCCAAAACATCCGAACATGGGAGGGANGCTGATTTGGCAAAGAGACTGTGGGATTTCAGCATCAGTTTGATCAATCACAGCATATCTCGCAGTGCCTGCTTCTGTAACTGTGTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTGGCCATTCAGCAGAAAAGGGGCCTCTGGGTTTTCATGGAATTCCACTGCCGAACAAGTTACTCATGGAATCGATGCCACTGGCCTCACTGCCATTGTCACAGGAGCATCTAGTGGCATTGGTGCTGAGACTACTCGTGTTCTTGCCTTGCGTGGTGCCCATGTGATTATGGGTGTGAGAAATTTGGTTGNTGCTAAAAATGTCAAAGAAACAATACTTAAGGAGATTCCCTCTGCTAAAGTTGATGCCATGGAATTAGATCTTAGTTCAATGGATTCTGTCAAGAAATTTGCATCAGAATATAATTCCTCTGGTCGTCCATTGAACATCTTGATAAACAATGCAGGGATTATGGCGTGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTATTGGATACCATGAAGAAAACAACACGTCAGAGTAAGAAGGAAGGAAGAATTGTTAATGTCTCCTCAGAGGCTCACCGATTTTCATATGCTGAAGGAATCCGTTTTGACAAAATTAATGATCAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTTCCAACATTTTACATGCCAATGAACTATCAAGACGTCTCAAGGAAGATGGGGTGGATATCACTGCAAATTCTCTTCATCCAGGAACAATTGTCACCAATCTTTTCCGTTATAACAATACAATAAATGGTCTAATAAATGTGATTGGGAGACTTGTGATGAAAAATGTTCAGCAGGGAGCAGCGACAACATGCTATGTAGCATTGCANCCACAAGTGAAAGGAGTTAGTGGCAAGTATTTTTCAGACAGCAATGTGTCCAAAACAACCGAACATGGGAGGGACGCCGATTTGGCCAAGAAACTCTGGGATTTCAGCATCAATCTGATTAAACAGAAATAAAATACCTATCTACCAAAAAGTGTTGTTTGTCAATGGAGATGGCAATGGCAATGGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	447638	460841	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003361.1	PF00106.20	adh_short	31	175	1.10E-19
Glyur000025s00003361.1	PF00106.20	adh_short	368	515	8.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.471
SRR1783600	control	5.566
SRR1783602	moderate drought stress	7.990
SRR1811619	moderate drought stress	7.841

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.736
DRR006520	Root Summer glycyrrhizin high producing strain	11.978
DRR006521	Root Winter glycyrrhizin high producing strain	2.271
DRR006522	Root Winter glycyrrhizin high producing strain	2.196
DRR006523	Root Summer glycyrrhizin low producing strain	18.354
DRR006524	Root Summer glycyrrhizin low producing strain	18.472
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.492
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.957

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.746
SRR2868004	Drought Stress (root)	33.009
SRR2967015	Control (root)	35.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.406
SRR9715740	Leaf	44.532
SRR9715741	Leaf	32.075
SRR9715739	Root	2.420
SRR9715742	Root	12.063
SRR9715743	Root	9.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.927
SRR8749028	MeJA induced 9h	14.034
SRR8749029	MeJA induced 9h	17.019
SRR8749030	Uninduced	23.268
SRR8749031	Uninduced	28.700
SRR8749032	Uninduced	23.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.400
SRR8400027	Control - Root	23.144