Gene detail

Gene detail information of Glyur000025s00003355

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52440.1	1.00E-57	Bacterial sec-independent translocation protein mttA/Hcf106
NR	XP_004496540.1	3.75E-139	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic-like [Cicer arietinum]
COG	NP_925949.1	7.00E-13	hypothetical protein gsr3003 [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q94G16\|TATB_PEA	5.00E-132	Sec-independent protein translocase protein TATB, chloroplastic (Precursor)
trEMBL	tr\|I3S6U9\|I3S6U9_LOTJA	1.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:AFK35991.1}

Sequence

Transcript Sequence

>Glyur000025s00003355.1
AAAAGATTTTCTAAAAAAAACATTTATATTCCCTAAATTATTAAGCCCAATTTGGAGATAGGATTCAAGGGCCGAAACAGCAGCAATCCAATCATCANTCGTCATTCATCAGAGTCTCCAAAAAAACAGTGTCTTCAAAATGACACTGTCTCTGGCGATGGCTTCTTCAACCGTTTTATGTCCTAAATTGGGGTCATGTGCAGTGTCACTATCTACTTGTACGACTTCACAAGCAAAAATCCAACATTTTCATCTCTATTCATGGTTATCTCCACTGGGTCGAGGTCTTTTCTCGCCTTGGAATGGTTTGAAGCATCTGGGTATCTCAAGTAAACCCAAACCTCTTCTTCACATAGATAGAAAGGGTAGGTGTAAGGGTAAGGTGGTTTATGCGTCTCTCTTTGGAGTTGGAGCCCCTGAAGCACTAGTAATTGGGGTCGTCGCTTTGTTGGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGGAAAACATTGCGTGCATTTCAACCCACCATTAGAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACACTTGAACGGGAGATTGGTCTTGATGACATTTCAACCCCAACACAGAACACATACAACTCAAATGTACAAAACACCACATCAACTCCATCATCCACTGCTAGTACCAATAGTTCTCAGATTGCTGTTGACCCTAATGGCAGTGGTACACAAGATGCAAGTAGAGCATACAGCACTGAGGATTATCTTAAGATTACAGAAGAGCAGCTAAAGGCTTCTGCTGCACAACAGCAGGGGCAGACACCGCCTCCTAAAGAAGGCGAAACCGAACCGCAAATCCAGCCTCCTGCGGCTAATGAAACAGCTGCTACTGTGCCACCACCTCAGAAGCAACAAAATGAGACGTTACCTCTGGACTCATAGGGAAGTACAAAGTAACTTTGCTTGCCCAATTACCCGGAATGTGGGCAGGGCACTACTGCTGGAATAAGTGATGTGGAAACGAATCAGTGTCACGCAATTTTGTTGCCTCCTAGTCATTTAATTTTTGTAAAAAAGTAAAGTAAGAAAACCATTAAAATGTAGTGTATTTTTTAATTTAATATTGTAGTTAATGACTTTGCCAAAGCAGAGCATCCTCCCTTTCTCCGTTTTTTTAGGTGAAAAATGAAGATGAATCACCCCAAAGGATCCTCTAGGCGACGGTCACGGACTAATTCTCCATAGAGCTCCCTTTCTCTTACAGTCTCAATAACAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	423340	427070	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009306 protein secretion

GO:0015031 protein transport

cellular_component

GO:0005886 plasma membrane

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003355.1	PF02416.11	MttA_Hcf106	90	140	3.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.887
SRR1783600	control	40.466
SRR1783602	moderate drought stress	34.546
SRR1811619	moderate drought stress	35.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.340
DRR006520	Root Summer glycyrrhizin high producing strain	23.211
DRR006521	Root Winter glycyrrhizin high producing strain	19.899
DRR006522	Root Winter glycyrrhizin high producing strain	19.031
DRR006523	Root Summer glycyrrhizin low producing strain	16.339
DRR006524	Root Summer glycyrrhizin low producing strain	16.591
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.876
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.636
SRR2868004	Drought Stress (root)	16.644
SRR2967015	Control (root)	17.804

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.863
SRR9715740	Leaf	54.885
SRR9715741	Leaf	39.547
SRR9715739	Root	7.147
SRR9715742	Root	12.713
SRR9715743	Root	10.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.546
SRR8749028	MeJA induced 9h	10.340
SRR8749029	MeJA induced 9h	11.951
SRR8749030	Uninduced	9.665
SRR8749031	Uninduced	3.800
SRR8749032	Uninduced	4.590

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.298
SRR8400027	Control - Root	30.862