Gene detail

Gene detail information of Glyur000025s00003351

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25640.1	2.00E-157	detoxifying efflux carrier 35
NR	XP_004496534.1	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Cicer arietinum]
COG	YP_004053255.1	2.00E-23	mate efflux family protein [Marivirga tractuosa DSM 4126]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	2.00E-111	Protein TRANSPARENT TESTA 12
trEMBL	tr\|F4ZG52\|F4ZG52_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000025s00003351.1
ATAAACAAATAAAACATATTCCTAGGATGCATGATATATAGCATTGCAGCGTTGATGGTGGGAGAGAGAGAGAGAGGGACAGTCCAGAAGAGATCGAGAGTGATAACTATTCACTTTCACTGGTTAATAACGTTGTTAAGGTTGTTGAGGATTATGAGAAGTATGTGCAACTAACTCGAACTATTAATGCGTTGTTGTTGCCTCAGTCCCCAGTTGTTACTTCTCATTCAACAACAGGCAAACACTGCCATACACGTGTACGGTGATTGACAATATGGATAGTACTCCCCTGCTGAACGGCGCGGCGGCGGCGGCGGAGGACGGCGACTACGAGGAGGTGAAGGGGTGGAAGGAGGCGAGGAGGGTGTTCTGGATAGAAACGGTGAAAATATGGCAGATAGCAATGCCCATAGTTTTCAACATTTGGTGTCAATTCGGCGTCAACTCCGTCACCAACATCTTCGTTGGCCATCTTGGTGACTTCGAGCTCTCTGCTGTCTCTCTCATTAACTCTGTCATTGGCACTTTCGCTTTTGGCTTCATGCTTGGCATGGGGAGCGCAACAGAGACGCTCTGCGGTCAAGCTTTTGGAGCTGGGCAGGTTAACATGCTTGGTGTTTACATGCAACGCTCGTGGGTAATTTTATTCGTGACCAGTATTTTNCTCTTGCCAATATACATTTTTTCTGCTCCAATTTTAAAGCTTCTAGGCCAACAAAAAGACATAGCTGACCTTGCTGGAAGTTTCTCAGTTTTAGTGATTCCTCAATTCCTTTCACTCTCCTTCAATTTCCCAACCCAAAAGTTCCTTCAAGCTCAAAGTAAGGTTAACGTCATTGCATGGATTGGGTTAGTGGCTCTAATTTTGCACATTGGGCTTCTCTGGCTCTTGATTTATGTACTAGATTTAGGCTTAACGGGTGCNGCGGTGGCATTTGATATCACAAGTTGGGGAATCACGGTGGCTCAACTTGTTTATGTGGTGGGTTGGTGTAAGGATGGGTGGAATGGGTTTTCATGGTTGGCTCTTAAGGATATATGGGCCTTTGTTAGGCTCTCTGTTGCATCAGCTGTAATGCTTTGCCTTGAAGTTTGGTATTTGATGAGCCTCATTGTTCTTGCTGGTCACCTTGATAATGCAGTCATTGCTGTTGATTCCCTCTCTATATGCATGAATTTCAATGGATGGGAAGGCATGATCTTCATTGGAGTAAATGCAGCTATAAGTGTCAGAGTTTCCAACGAACTTGGACTTCGACATCCAAGAGCTGCCAAATACTCTGTGTATGTGACAGTCTTTCAATCTCTTTTCATCGGAATCTTCTTCAGTGCTGTCATTTTGTTAGCCAAAGACCATATTGCCATCGTTTTTACAAACAGNAAGCCTTTGCATGATGCTGTTTCAAAACTAGGAAACCTCCTTGCCATAACAATGGTTCTAAACAGTGTCCAACCAGTGATTTCTGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTTGTGGCTTACATCAACGTAGGTTGTTATTACTTGTTTGGACTTCCACTGGGGTACCTTCTTGGTTATGTGGCAAATTTGGGAGTTAAGGGACTCTGGGGAGGCATGATATGTGGAATTACTCTCCAGACCTTGCTTCTCATGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTAGGCAATGCTTCTCATTTCTCTCTAAAACTTCTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	406340	409948	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003351.1	PF01554.13	MatE	45	204	8.20E-32
Glyur000025s00003351.1	PF01554.13	MatE	281	427	3.40E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.640
SRR1783600	control	0.686
SRR1783602	moderate drought stress	0.765
SRR1811619	moderate drought stress	0.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.604
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.883
SRR2868004	Drought Stress (root)	1.120
SRR2967015	Control (root)	1.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.911
SRR9715740	Leaf	3.626
SRR9715741	Leaf	0.382
SRR9715739	Root	1.259
SRR9715742	Root	0.420
SRR9715743	Root	0.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.559
SRR8749028	MeJA induced 9h	0.272
SRR8749029	MeJA induced 9h	0.305
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.582
SRR8400027	Control - Root	3.265